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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18372449	T-C	HOMO	INTERGENIC
SBS	Chr1	22474569	G-A	HET	UTR_3_PRIME
SBS	Chr1	25985626	G-A	HOMO	INTERGENIC
SBS	Chr10	6776726	C-T	HET	INTERGENIC
SBS	Chr11	18481011	C-T	HET	INTERGENIC
SBS	Chr12	15297945	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g26240
SBS	Chr12	21212935	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g34850
SBS	Chr12	2129551	G-T	HET	INTRON
SBS	Chr12	250875	C-T	HET	INTRON
SBS	Chr2	10466895	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g18040
SBS	Chr2	11212268	A-G	HOMO	INTRON
SBS	Chr2	35297042	T-C	HET	INTERGENIC
SBS	Chr2	35496367	G-A	HET	INTERGENIC
SBS	Chr3	15399958	G-T	HET	INTERGENIC
SBS	Chr3	18666197	G-T	HET	INTERGENIC
SBS	Chr3	23725959	C-T	HET	INTERGENIC
SBS	Chr3	25987686	A-G	HET	INTRON
SBS	Chr3	7121408	A-G	HET	INTERGENIC
SBS	Chr5	11075749	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19080
SBS	Chr5	11870713	G-A	HET	INTERGENIC
SBS	Chr5	12250318	A-G	HOMO	INTERGENIC
SBS	Chr5	21208455	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g35730
SBS	Chr5	28707832	A-G	HET	INTRON
SBS	Chr5	3982751	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07470
SBS	Chr5	8807807	T-C	HET	SYNONYMOUS_CODING
SBS	Chr6	12769637	C-T	HET	INTERGENIC
SBS	Chr6	14667880	T-A	HET	INTERGENIC
SBS	Chr6	17892549	C-T	HET	INTERGENIC
SBS	Chr6	21662933	T-C	HET	INTERGENIC
SBS	Chr6	26650376	A-T	HOMO	UTR_3_PRIME
SBS	Chr7	1019416	A-G	HET	INTRON
SBS	Chr8	13920463	A-C	HOMO	INTRON
SBS	Chr8	15391861	G-A	HET	INTRON
SBS	Chr8	18394838	G-T	HOMO	INTRON
SBS	Chr8	25600255	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40460
SBS	Chr8	9922290	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	19838447	C-T	HET	INTERGENIC
SBS	Chr9	21282359	C-T	HET	INTERGENIC
SBS	Chr9	595945	G-A	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1381031	1381033	2
Deletion	Chr1	1819920	1819922	2
Deletion	Chr6	2173805	2173811	6
Deletion	Chr3	2478503	2478504	1
Deletion	Chr3	2882432	2882433	1
Deletion	Chr12	2936173	2936185	12
Deletion	Chr10	3145218	3145219	1
Deletion	Chr12	3222195	3222199	4	LOC_Os12g06640
Deletion	Chr8	3322625	3322626	1
Deletion	Chr7	3401664	3401665	1
Deletion	Chr9	6357954	6357955	1	LOC_Os09g11420
Deletion	Chr2	6512052	6512058	6	LOC_Os02g12480
Deletion	Chr7	7897569	7897570	1
Deletion	Chr9	8427892	8427894	2	LOC_Os09g14250
Deletion	Chr10	8575420	8575460	40
Deletion	Chr3	9001451	9001452	1	LOC_Os03g16300
Deletion	Chr8	9427504	9427505	1
Deletion	Chr6	9868740	9868741	1
Deletion	Chr9	10709948	10710037	89	LOC_Os09g17510
Deletion	Chr3	10735738	10735739	1
Deletion	Chr7	11793568	11793571	3
Deletion	Chr7	12595867	12595869	2
Deletion	Chr3	13601055	13601057	2
Deletion	Chr7	14189955	14189956	1
Deletion	Chr7	14224765	14224766	1
Deletion	Chr8	18147092	18147093	1
Deletion	Chr3	18512990	18512993	3	LOC_Os03g32360
Deletion	Chr9	19141035	19141037	2
Deletion	Chr11	20210311	20210314	3	LOC_Os11g34500
Deletion	Chr5	20332417	20332419	2
Deletion	Chr8	21294944	21294945	1
Deletion	Chr3	23573437	23573438	1
Deletion	Chr11	25416001	25631000	215000	39
Deletion	Chr11	25456550	25456551	1
Deletion	Chr1	26555324	26555325	1
Deletion	Chr3	26657352	26657435	83
Deletion	Chr2	28494960	28494981	21
Deletion	Chr4	30663832	30663833	1
Deletion	Chr1	40636868	40636869	1

Insertions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	24777232	24777232	1
Insertion	Chr1	3532353	3532353	1
Insertion	Chr11	12618042	12618042	1
Insertion	Chr11	19082831	19082833	3
Insertion	Chr11	19515731	19515735	5
Insertion	Chr11	5052560	5052563	4	LOC_Os11g09414
Insertion	Chr12	2104645	2104645	1
Insertion	Chr2	14476615	14476615	1
Insertion	Chr2	18776707	18776710	4
Insertion	Chr2	35510317	35510317	1
Insertion	Chr3	24794198	24794200	3
Insertion	Chr4	11707001	11707001	1
Insertion	Chr4	20667967	20668039	73
Insertion	Chr4	583136	583137	2
Insertion	Chr5	12530861	12530861	1
Insertion	Chr5	1329961	1329961	1	LOC_Os05g03280
Insertion	Chr5	1949289	1949289	1
Insertion	Chr5	7227450	7227452	3
Insertion	Chr6	1271796	1271796	1
Insertion	Chr6	9005684	9005684	1
Insertion	Chr7	16836657	16836657	1	LOC_Os07g28760
Insertion	Chr7	26102112	26102112	1
Insertion	Chr7	27253455	27253455	1
Insertion	Chr7	6258439	6258494	56
Insertion	Chr7	7882486	7882486	1
Insertion	Chr8	14231324	14231324	1
Insertion	Chr8	17016910	17016910	1
Insertion	Chr8	17547260	17547260	1
Insertion	Chr8	5362963	5362963	1	LOC_Os08g09230
Insertion	Chr9	2073707	2073710	4
Insertion	Chr9	21358960	21358960	1
Insertion	Chr9	2815581	2815581	1
Insertion	Chr9	7769384	7769384	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	594461	1585931
Inversion	Chr5	28396373	28614487	2
Inversion	Chr5	28396381	28614494	LOC_Os05g49870

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7181577	Chr7	13575078
Translocation	Chr10	10255062	Chr5	22167565	LOC_Os05g17830
Translocation	Chr8	10872996	Chr3	21600974
Translocation	Chr8	10873122	Chr3	18166752	LOC_Os03g19340
Translocation	Chr7	11077830	Chr4	29420494
Translocation	Chr10	14186731	Chr5	12255964
Translocation	Chr10	14196613	Chr5	12255970
Translocation	Chr12	20625776	Chr9	16354004	LOC_Os09g35830
Translocation	Chr11	28342023	Chr3	35848230	LOC_Os11g47130

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