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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26585374	A-G	HET	INTRON
SBS	Chr1	29857391	G-T	HOMO	INTERGENIC
SBS	Chr1	33157446	G-C	HOMO	INTRON
SBS	Chr1	35124791	C-A	HOMO	INTERGENIC
SBS	Chr1	35124793	C-A	HOMO	INTERGENIC
SBS	Chr1	35128880	A-T	HOMO	INTERGENIC
SBS	Chr1	39108329	T-A	HET	INTERGENIC
SBS	Chr11	17978746	G-A	HET	INTERGENIC
SBS	Chr11	18307379	G-A	HET	INTRON
SBS	Chr11	27655341	C-T	HET	INTERGENIC
SBS	Chr12	15943162	T-G	HOMO	INTERGENIC
SBS	Chr12	20323249	T-A	HOMO	INTERGENIC
SBS	Chr12	27295002	T-A	HET	INTERGENIC
SBS	Chr12	3614114	C-T	HET	INTERGENIC
SBS	Chr2	10213959	T-C	HET	INTRON
SBS	Chr2	17435821	A-T	HET	INTERGENIC
SBS	Chr2	24002827	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	32747781	C-A	HET	INTERGENIC
SBS	Chr2	32747786	G-A	HET	INTERGENIC
SBS	Chr2	35290699	G-A	HET	UTR_3_PRIME
SBS	Chr3	25079551	T-C	HET	INTERGENIC
SBS	Chr3	36075788	T-C	HET	INTRON
SBS	Chr4	14848641	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	19209952	G-A	HET	INTERGENIC
SBS	Chr4	20648675	G-T	HOMO	INTERGENIC
SBS	Chr4	25834734	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	3326475	T-G	HET	INTERGENIC
SBS	Chr4	6753136	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12240
SBS	Chr4	9733420	T-C	HET	INTERGENIC
SBS	Chr5	8277421	A-G	HET	INTERGENIC
SBS	Chr6	6342030	G-C	HOMO	INTERGENIC
SBS	Chr6	894305	G-A	HET	INTRON
SBS	Chr7	12953830	A-T	HET	INTERGENIC
SBS	Chr7	16904323	G-T	HET	INTERGENIC
SBS	Chr7	24815164	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	26182251	C-T	HET	INTERGENIC
SBS	Chr8	4009627	A-T	HET	INTERGENIC
SBS	Chr9	20353935	C-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4376954	4376959	5	LOC_Os10g08080
Deletion	Chr10	4422512	4422514	2
Deletion	Chr7	4884916	4884926	10
Deletion	Chr9	7491312	7491313	1
Deletion	Chr7	7615375	7615376	1
Deletion	Chr9	8126636	8126637	1
Deletion	Chr8	10290243	10290244	1
Deletion	Chr8	10325053	10325054	1
Deletion	Chr1	10778417	10778443	26
Deletion	Chr7	12991992	12991994	2
Deletion	Chr1	14009724	14009736	12
Deletion	Chr1	15114089	15114095	6
Deletion	Chr2	16596250	16596290	40
Deletion	Chr8	16704906	16704907	1
Deletion	Chr1	16752036	16752037	1
Deletion	Chr7	16840817	16840820	3
Deletion	Chr12	18602712	18602713	1
Deletion	Chr8	20864015	20864016	1
Deletion	Chr3	21710001	21879000	169000	24
Deletion	Chr3	23195006	23195009	3	LOC_Os03g41770
Deletion	Chr4	25429592	25429593	1
Deletion	Chr1	25492622	25492623	1
Deletion	Chr1	26779183	26779184	1
Deletion	Chr1	40075465	40075468	3

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	10048159	10048159	1
Insertion	Chr12	12658548	12658549	2
Insertion	Chr12	21737606	21737657	52
Insertion	Chr12	2409601	2409601	1
Insertion	Chr2	7084291	7084291	1
Insertion	Chr3	27155236	27155236	1
Insertion	Chr6	18354056	18354057	2
Insertion	Chr6	6862273	6862276	4
Insertion	Chr7	19832090	19832090	1
Insertion	Chr7	26282649	26282649	1
Insertion	Chr8	24495001	24495001	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18855774	18855995	LOC_Os01g34200

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8879614	Chr2	20113511	LOC_Os09g14880
Translocation	Chr12	17770963	Chr6	26595423
Translocation	Chr8	25839824	Chr2	18875178	LOC_Os02g42950

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