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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2105710	G-A	HET	INTRON
SBS	Chr1	7502894	T-A	HET	INTERGENIC
SBS	Chr1	19142299	C-T	HET	INTERGENIC
SBS	Chr1	21978066	G-T	HET	INTRON
SBS	Chr1	42409181	T-C	HET	INTERGENIC
SBS	Chr2	3297183	C-T	HET	INTERGENIC
SBS	Chr2	3914976	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g07560
SBS	Chr2	13525129	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22700
SBS	Chr3	3006672	G-C	HET	INTRON
SBS	Chr3	5882820	T-C	HET	INTRON
SBS	Chr3	7056972	G-T	HET	INTERGENIC
SBS	Chr3	10535090	T-C	HOMO	INTERGENIC
SBS	Chr3	21699414	C-T	HET	INTERGENIC
SBS	Chr4	6417769	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	13954551	A-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	19761223	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32760
SBS	Chr5	6987907	T-C	HET	INTRON
SBS	Chr5	12198980	G-T	HET	INTRON
SBS	Chr5	25121509	C-T	HET	INTERGENIC
SBS	Chr5	29645126	G-A	HET	INTERGENIC
SBS	Chr6	6164390	C-T	HET	INTERGENIC
SBS	Chr6	10286086	G-A	HET	INTRON
SBS	Chr6	17200694	A-G	HOMO	INTERGENIC
SBS	Chr7	4110852	C-G	HOMO	INTERGENIC
SBS	Chr7	8985381	G-A	HET	INTERGENIC
SBS	Chr7	21421061	G-C	HET	INTERGENIC
SBS	Chr8	19962497	C-T	HET	INTERGENIC
SBS	Chr9	741794	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	1679176	G-T	HET	INTERGENIC
SBS	Chr9	12772346	G-T	HET	INTERGENIC
SBS	Chr9	12790961	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21200
SBS	Chr9	18557193	C-T	HET	INTERGENIC
SBS	Chr10	4098929	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	19256570	G-C	HET	INTRON
SBS	Chr10	19256572	T-C	HET	INTRON
SBS	Chr11	4094688	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g07922
SBS	Chr11	4559542	C-T	HOMO	INTRON
SBS	Chr11	26762680	G-T	HET	INTERGENIC
SBS	Chr12	5328943	G-A	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1334263	1334264	1
Deletion	Chr11	4474008	4474026	18
Deletion	Chr4	5155371	5155372	1
Deletion	Chr7	8551787	8551860	73
Deletion	Chr4	10037973	10037978	5	LOC_Os04g18160
Deletion	Chr12	10602216	10602217	1
Deletion	Chr1	11333649	11333652	3	LOC_Os01g19960
Deletion	Chr12	12293021	12293025	4
Deletion	Chr12	12706873	12706893	20
Deletion	Chr8	13125720	13125722	2
Deletion	Chr8	15171857	15171948	91
Deletion	Chr2	15518105	15518113	8	LOC_Os02g26420
Deletion	Chr10	16134604	16134606	2
Deletion	Chr11	16183465	16183466	1
Deletion	Chr9	22975880	22975884	4
Deletion	Chr6	23373178	23373186	8
Deletion	Chr5	23397358	23397365	7
Deletion	Chr1	26042137	26042139	2
Deletion	Chr8	26045538	26045539	1
Deletion	Chr2	34625754	34625759	5
Deletion	Chr1	41084963	41084979	16

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	7077701	7077704	4
Insertion	Chr1	31247562	31247562	1
Insertion	Chr1	36086408	36086409	2
Insertion	Chr2	35079088	35079088	1
Insertion	Chr3	9211045	9211086	42
Insertion	Chr4	30176660	30176661	2
Insertion	Chr5	17488456	17488457	2
Insertion	Chr6	14998496	14998496	1
Insertion	Chr7	230667	230667	1	LOC_Os07g01360
Insertion	Chr7	17359505	17359574	70
Insertion	Chr8	14458464	14458464	1
Insertion	Chr8	25676066	25676066	1
Insertion	Chr9	2243395	2243395	1	LOC_Os09g04240
Insertion	Chr9	18089861	18089928	68
Insertion	Chr12	11406539	11406539	1
Insertion	Chr12	23947255	23947255	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	12021272	Chr5	355326	LOC_Os05g20480
Translocation	Chr10	12021274	Chr5	355072	LOC_Os05g20480

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