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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14484599	T-C	HET	INTERGENIC
SBS	Chr1	19737688	A-G	HET	INTERGENIC
SBS	Chr1	24169127	T-A	HET	INTRON
SBS	Chr1	28819394	C-T	HET	INTERGENIC
SBS	Chr1	36020877	T-C	HET	INTRON
SBS	Chr1	40150178	G-A	HET	INTRON
SBS	Chr2	10298364	C-A	HET	INTERGENIC
SBS	Chr2	18009544	A-T	HET	INTERGENIC
SBS	Chr2	22964042	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38010
SBS	Chr2	25456535	T-A	HET	INTRON
SBS	Chr2	32671215	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53380
SBS	Chr3	10988044	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g19530
SBS	Chr3	10988047	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g19530
SBS	Chr3	12271237	C-T	HOMO	INTERGENIC
SBS	Chr3	21676043	C-A	HET	INTRON
SBS	Chr5	336637	A-G	HOMO	INTERGENIC
SBS	Chr5	2781782	A-T	HOMO	INTRON
SBS	Chr5	9719604	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17040
SBS	Chr5	9719606	G-T	HET	STOP_GAINED	LOC_Os05g17040
SBS	Chr5	10217522	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17780
SBS	Chr5	23226998	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g39570
SBS	Chr6	14020096	C-A	HET	INTERGENIC
SBS	Chr6	14626674	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24970
SBS	Chr6	16940258	G-A	HET	INTRON
SBS	Chr7	5521748	C-G	HOMO	UTR_5_PRIME
SBS	Chr7	13330390	G-A	HOMO	INTRON
SBS	Chr8	6542377	G-A	HOMO	INTRON
SBS	Chr8	7577360	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g12790
SBS	Chr8	18279346	G-A	HET	INTERGENIC
SBS	Chr8	22037782	T-C	HOMO	INTERGENIC
SBS	Chr11	23980755	A-G	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	305208	306069	861	LOC_Os01g01600
Deletion	Chr10	1847471	1847472	1
Deletion	Chr1	3359906	3359912	6	2
Deletion	Chr5	6406743	6406744	1
Deletion	Chr9	6854001	6865000	11000	2
Deletion	Chr11	7223675	7223679	4
Deletion	Chr12	7366722	7366726	4
Deletion	Chr7	7428177	7428191	14
Deletion	Chr2	7458264	7458267	3
Deletion	Chr11	7923218	7923219	1
Deletion	Chr11	9337001	9348000	11000	2
Deletion	Chr7	9706853	9706858	5
Deletion	Chr2	10314475	10314482	7
Deletion	Chr3	12132051	12132054	3
Deletion	Chr7	12478826	12478835	9	LOC_Os07g22260
Deletion	Chr7	12685920	12685921	1
Deletion	Chr7	12846843	12846858	15
Deletion	Chr5	16933001	16950000	17000	5
Deletion	Chr11	17001427	17001430	3
Deletion	Chr7	17834185	17834186	1	LOC_Os07g30190
Deletion	Chr12	20855183	20855206	23
Deletion	Chr3	21462027	21462032	5
Deletion	Chr3	21731227	21731240	13	LOC_Os03g39110
Deletion	Chr11	27663237	27663243	6
Deletion	Chr2	28053001	28066000	13000	3
Deletion	Chr2	29058171	29058175	4
Deletion	Chr1	32569759	32569783	24

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	9472339	9472340	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8041450	8653164
Inversion	Chr1	14389331	14594704
Inversion	Chr12	20914424	20935397
Inversion	Chr12	20914435	20935400
Inversion	Chr3	35362408	35867888	LOC_Os03g62430

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10307075	Chr3	32459731

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