Search Results
Mutant Information |
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Mutant Name | FN4594-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4594-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 24
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 29034914 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 33445575 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g57830 |
SBS | Chr1 | 35827734 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g61900 |
SBS | Chr1 | 35827735 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g61900 |
SBS | Chr3 | 3266276 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g06510 |
SBS | Chr4 | 2005273 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g04280 |
SBS | Chr5 | 2921503 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 13381570 | G-C | HET | INTRON | |
SBS | Chr5 | 25612330 | A-T | HET | INTERGENIC | |
SBS | Chr6 | 27740115 | G-A | HOMO | INTRON | |
SBS | Chr7 | 2720332 | G-C | HET | INTERGENIC | |
SBS | Chr7 | 4939292 | A-T | HET | INTERGENIC | |
SBS | Chr8 | 16921912 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 21098082 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 23117350 | T-C | HET | UTR_3_PRIME | |
SBS | Chr9 | 10051629 | G-A | HET | INTRON | |
SBS | Chr9 | 15187230 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr10 | 11145455 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 14993516 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g28724 |
SBS | Chr11 | 8255936 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g14650 |
SBS | Chr11 | 10182971 | A-G | HET | INTRON | |
SBS | Chr11 | 22619622 | G-A | HET | INTRON | |
SBS | Chr11 | 22619623 | G-A | HET | INTRON | |
SBS | Chr12 | 9829952 | T-A | HOMO | INTERGENIC |
Deletions: 26
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 1446601 | 1446608 | 7 | |
Deletion | Chr10 | 1470680 | 1470681 | 1 | |
Deletion | Chr5 | 1886670 | 1886671 | 1 | |
Deletion | Chr5 | 3065725 | 3065726 | 1 | |
Deletion | Chr10 | 3806568 | 3806575 | 7 | |
Deletion | Chr7 | 4361136 | 4361143 | 7 | LOC_Os07g08470 |
Deletion | Chr2 | 4912785 | 4912790 | 5 | |
Deletion | Chr11 | 6391544 | 6391545 | 1 | |
Deletion | Chr8 | 8597551 | 8597552 | 1 | |
Deletion | Chr12 | 9650902 | 9650908 | 6 | |
Deletion | Chr3 | 10557205 | 10557208 | 3 | |
Deletion | Chr3 | 11884697 | 11884713 | 16 | LOC_Os03g20949 |
Deletion | Chr3 | 14406821 | 14406823 | 2 | |
Deletion | Chr10 | 15534467 | 15534489 | 22 | |
Deletion | Chr3 | 15931001 | 15985000 | 54000 | 6 |
Deletion | Chr4 | 17694142 | 17694144 | 2 | |
Deletion | Chr1 | 26042355 | 26042356 | 1 | |
Deletion | Chr1 | 27406525 | 27406526 | 1 | LOC_Os01g47880 |
Deletion | Chr8 | 27999780 | 27999781 | 1 | |
Deletion | Chr6 | 28050866 | 28050884 | 18 | |
Deletion | Chr11 | 28957597 | 28957624 | 27 | |
Deletion | Chr4 | 30029852 | 30029857 | 5 | LOC_Os04g50770 |
Deletion | Chr4 | 30627834 | 30627839 | 5 | |
Deletion | Chr3 | 34061138 | 34061155 | 17 | |
Deletion | Chr3 | 36249274 | 36249275 | 1 | |
Deletion | Chr1 | 37804517 | 37804519 | 2 |
Insertions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 1100941 | 1100948 | 8 | |
Insertion | Chr1 | 29781433 | 29781435 | 3 | LOC_Os01g51790 |
Insertion | Chr3 | 13515384 | 13515384 | 1 | |
Insertion | Chr3 | 15687342 | 15687342 | 1 | |
Insertion | Chr3 | 19571018 | 19571018 | 1 | |
Insertion | Chr3 | 29622033 | 29622033 | 1 | |
Insertion | Chr4 | 10286343 | 10286343 | 1 | |
Insertion | Chr8 | 15219830 | 15219841 | 12 | |
Insertion | Chr8 | 26700460 | 26700460 | 1 | |
Insertion | Chr9 | 1173584 | 1173589 | 6 | |
Insertion | Chr11 | 17554064 | 17554133 | 70 | |
Insertion | Chr11 | 25459135 | 25459136 | 2 | |
Insertion | Chr12 | 17226637 | 17226648 | 12 | LOC_Os12g29090 |
Inversions: 10
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 711860 | 834524 | LOC_Os12g02260 |
Inversion | Chr8 | 909671 | 909861 | LOC_Os08g02350 |
Inversion | Chr6 | 3166813 | 3166955 | |
Inversion | Chr10 | 11148720 | 11148823 | |
Inversion | Chr4 | 24376675 | 24376943 | LOC_Os04g41100 |
Inversion | Chr8 | 24447299 | 24595614 | |
Inversion | Chr1 | 26451192 | 26795019 | 2 |
Inversion | Chr6 | 27030832 | 27031043 | |
Inversion | Chr7 | 29250622 | 29250759 | LOC_Os07g48880 |
Inversion | Chr1 | 40987564 | 40987736 |
Translocations: 11
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 539444 | Chr9 | 656147 | |
Translocation | Chr12 | 539475 | Chr10 | 18251749 | |
Translocation | Chr11 | 3595573 | Chr3 | 995261 | LOC_Os03g07050 |
Translocation | Chr11 | 3596008 | Chr3 | 995253 | |
Translocation | Chr11 | 8628845 | Chr5 | 51438 | |
Translocation | Chr8 | 10330194 | Chr1 | 36631382 | |
Translocation | Chr8 | 10332064 | Chr3 | 15988480 | |
Translocation | Chr8 | 10332066 | Chr1 | 36624983 | |
Translocation | Chr10 | 18251682 | Chr9 | 659141 | |
Translocation | Chr8 | 20627719 | Chr6 | 16459080 | LOC_Os06g35390 |
Translocation | Chr8 | 20627833 | Chr6 | 1761024 | 2 |