Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29034914	G-A	HOMO	INTERGENIC
SBS	Chr1	33445575	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57830
SBS	Chr1	35827734	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61900
SBS	Chr1	35827735	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61900
SBS	Chr10	11145455	G-A	HOMO	INTERGENIC
SBS	Chr10	14993516	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g28724
SBS	Chr11	10182971	A-G	HET	INTRON
SBS	Chr11	22619622	G-A	HET	INTRON
SBS	Chr11	22619623	G-A	HET	INTRON
SBS	Chr11	8255936	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14650
SBS	Chr12	9829952	T-A	HOMO	INTERGENIC
SBS	Chr3	3266276	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06510
SBS	Chr4	2005273	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04280
SBS	Chr5	13381570	G-C	HET	INTRON
SBS	Chr5	25612330	A-T	HET	INTERGENIC
SBS	Chr5	2921503	T-A	HET	INTERGENIC
SBS	Chr6	27740115	G-A	HOMO	INTRON
SBS	Chr7	2720332	G-C	HET	INTERGENIC
SBS	Chr7	4939292	A-T	HET	INTERGENIC
SBS	Chr8	16921912	C-T	HET	INTERGENIC
SBS	Chr8	21098082	C-T	HET	INTERGENIC
SBS	Chr8	23117350	T-C	HET	UTR_3_PRIME
SBS	Chr9	10051629	G-A	HET	INTRON
SBS	Chr9	15187230	C-T	HET	SYNONYMOUS_CODING

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1446601	1446608	7
Deletion	Chr10	1470680	1470681	1
Deletion	Chr5	1886670	1886671	1
Deletion	Chr5	3065725	3065726	1
Deletion	Chr10	3806568	3806575	7
Deletion	Chr7	4361136	4361143	7	LOC_Os07g08470
Deletion	Chr2	4912785	4912790	5
Deletion	Chr11	6391544	6391545	1
Deletion	Chr8	8597551	8597552	1
Deletion	Chr12	9650902	9650908	6
Deletion	Chr3	10557205	10557208	3
Deletion	Chr3	11884697	11884713	16	LOC_Os03g20949
Deletion	Chr3	14406821	14406823	2
Deletion	Chr10	15534467	15534489	22
Deletion	Chr3	15931001	15985000	54000	6
Deletion	Chr4	17694142	17694144	2
Deletion	Chr1	26042355	26042356	1
Deletion	Chr1	27406525	27406526	1	LOC_Os01g47880
Deletion	Chr8	27999780	27999781	1
Deletion	Chr6	28050866	28050884	18
Deletion	Chr11	28957597	28957624	27
Deletion	Chr4	30029852	30029857	5	LOC_Os04g50770
Deletion	Chr4	30627834	30627839	5
Deletion	Chr3	34061138	34061155	17
Deletion	Chr3	36249274	36249275	1
Deletion	Chr1	37804517	37804519	2

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1100941	1100948	8
Insertion	Chr1	29781433	29781435	3	LOC_Os01g51790
Insertion	Chr11	17554064	17554133	70
Insertion	Chr11	25459135	25459136	2
Insertion	Chr12	17226637	17226648	12	LOC_Os12g29090
Insertion	Chr3	13515384	13515384	1
Insertion	Chr3	15687342	15687342	1
Insertion	Chr3	19571018	19571018	1
Insertion	Chr3	29622033	29622033	1
Insertion	Chr4	10286343	10286343	1
Insertion	Chr8	15219830	15219841	12
Insertion	Chr8	26700460	26700460	1
Insertion	Chr9	1173584	1173589	6

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	711860	834524	LOC_Os12g02260
Inversion	Chr8	909671	909861	LOC_Os08g02350
Inversion	Chr6	3166813	3166955
Inversion	Chr10	11148720	11148823
Inversion	Chr4	24376675	24376943	LOC_Os04g41100
Inversion	Chr8	24447299	24595614
Inversion	Chr1	26451192	26795000	2
Inversion	Chr6	27030832	27031043
Inversion	Chr7	29250622	29250759	LOC_Os07g48880
Inversion	Chr1	40987564	40987736

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	539444	Chr9	656147
Translocation	Chr12	539475	Chr10	18251749
Translocation	Chr11	3595573	Chr3	995261	LOC_Os03g07050
Translocation	Chr11	3596008	Chr3	995253
Translocation	Chr11	8628845	Chr5	51438
Translocation	Chr8	10330194	Chr1	36631382
Translocation	Chr8	10332064	Chr3	15988480
Translocation	Chr8	10332066	Chr1	36624983
Translocation	Chr10	18251682	Chr9	659141
Translocation	Chr8	20627719	Chr6	16459080	LOC_Os06g35390
Translocation	Chr8	20627833	Chr6	1761024	2

Main menu