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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	13235600	T-C	HET
SBS	Chr1	23659329	G-A	HET
SBS	Chr1	25906165	G-A	HET
SBS	Chr1	26146390	G-A	HET	LOC_Os01g46000
SBS	Chr1	5638058	C-T	HET
SBS	Chr1	9886578	C-T	HET
SBS	Chr10	15210636	T-A	HOMO
SBS	Chr10	5427356	C-T	HET
SBS	Chr10	864926	A-C	HET
SBS	Chr12	16184264	G-A	HET
SBS	Chr12	21595981	A-G	HET
SBS	Chr12	24115026	A-T	HET
SBS	Chr12	24662667	C-T	HET
SBS	Chr12	2804319	C-T	HOMO
SBS	Chr12	3786427	C-T	HOMO
SBS	Chr12	3786428	T-C	HOMO
SBS	Chr2	32774894	G-A	HOMO
SBS	Chr2	33891846	A-G	HET
SBS	Chr2	5880555	G-T	HET
SBS	Chr2	5880556	A-T	HET
SBS	Chr3	17133851	T-C	HET
SBS	Chr3	19808984	G-A	HOMO
SBS	Chr3	31302778	T-C	HET	LOC_Os03g55050
SBS	Chr3	8774120	A-G	HET
SBS	Chr3	9367822	G-A	HET
SBS	Chr4	12439917	G-A	HET
SBS	Chr4	20226224	A-G	HET
SBS	Chr4	28347007	A-T	HET
SBS	Chr4	8640138	T-A	HET
SBS	Chr5	12787228	T-C	HET
SBS	Chr5	21404122	C-T	HOMO
SBS	Chr5	21404125	C-T	HOMO
SBS	Chr5	21404126	C-T	HOMO
SBS	Chr5	28670551	G-A	HET
SBS	Chr5	29075501	C-G	HET
SBS	Chr6	1619971	C-T	HOMO
SBS	Chr6	5944864	A-G	HET
SBS	Chr6	99272	T-C	HET	LOC_Os06g01090
SBS	Chr8	13087350	T-A	HET	LOC_Os08g21860
SBS	Chr8	24290051	T-C	HET
SBS	Chr8	3305371	A-G	HET
SBS	Chr9	10234698	C-T	HET
SBS	Chr9	6310652	C-T	HET	LOC_Os09g11360

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	98920	98921	2
Deletion	Chr4	537957	537957	1
Deletion	Chr11	771017	771017	1
Deletion	Chr11	1937020	1937023	4	LOC_Os11g04570
Deletion	Chr5	2071510	2071510	1
Deletion	Chr4	3805285	3805294	10
Deletion	Chr3	5924309	5924315	7	LOC_Os03g11470
Deletion	Chr11	6841327	6841344	18
Deletion	Chr5	8515160	8515161	2
Deletion	Chr10	8607955	8608118	164
Deletion	Chr5	9774143	9774143	1
Deletion	Chr10	12093511	12093518	8
Deletion	Chr5	12801639	12801640	2
Deletion	Chr6	14291110	14291115	6
Deletion	Chr7	15042203	15042247	45
Deletion	Chr12	15118620	15118621	2
Deletion	Chr2	15400075	15400081	7
Deletion	Chr8	15533155	15533155	1
Deletion	Chr5	15670693	15670696	4	LOC_Os05g26970
Deletion	Chr8	15943505	15943505	1
Deletion	Chr10	16014368	16014368	1
Deletion	Chr4	16550673	16550673	1
Deletion	Chr10	16807973	16807977	5	LOC_Os10g31990
Deletion	Chr10	18031104	18031104	1
Deletion	Chr6	18938655	18938657	3
Deletion	Chr4	21379757	21379758	2
Deletion	Chr5	21419001	21498000	79000	18
Deletion	Chr12	21905921	21905921	1
Deletion	Chr12	22816522	22816523	2
Deletion	Chr2	23145394	23145394	1
Deletion	Chr1	23424765	23424765	1
Deletion	Chr5	25078614	25078614	1
Deletion	Chr1	27352713	27352713	1
Deletion	Chr6	28947646	28947646	1
Deletion	Chr2	31824249	31824257	9	LOC_Os02g51970
Deletion	Chr3	33417710	33417710	1
Deletion	Chr1	40192330	40192335	6
Deletion	Chr1	41620918	41620918	1

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23067221	23067221	1
Insertion	Chr1	26085970	26085970	1
Insertion	Chr1	42158699	42158699	1
Insertion	Chr10	639423	639477	55
Insertion	Chr10	8252876	8252876	1
Insertion	Chr11	22104942	22104946	5
Insertion	Chr11	22860488	22860601	114
Insertion	Chr12	11387161	11387164	4
Insertion	Chr2	5699278	5699289	12
Insertion	Chr4	12162934	12162934	1
Insertion	Chr4	23912123	23912123	1
Insertion	Chr4	32912475	32912475	1
Insertion	Chr4	8368709	8368709	1
Insertion	Chr6	18053328	18053328	1
Insertion	Chr6	24286484	24286484	1
Insertion	Chr7	20410329	20410362	34
Insertion	Chr7	23039478	23039479	2
Insertion	Chr8	13425492	13425542	51
Insertion	Chr8	17547260	17547260	1
Insertion	Chr8	20144129	20144226	98
Insertion	Chr9	21358812	21358812	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3060194	3200560	LOC_Os08g05930
Inversion	Chr8	3060205	3200567	LOC_Os08g05930
Inversion	Chr12	4570447	4721673	LOC_Os12g09030
Inversion	Chr12	4573582	4721679	LOC_Os12g09030
Inversion	Chr7	10815149	10815505

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr5	3985869	Chr2	32316953
Translocation	Chr5	3986055	Chr2	32316958
Translocation	Chr6	5355711	Chr5	3296648
Translocation	Chr6	5355721	Chr5	3304521

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