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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16259071	T-C	HET	INTERGENIC
SBS	Chr1	18305930	G-A	HET	INTRON
SBS	Chr1	23783179	C-A	HET	INTRON
SBS	Chr1	42574351	T-A	HET	INTERGENIC
SBS	Chr1	43269181	C-T	HET	#VALUE!
SBS	Chr10	11678592	G-T	HET	SYNONYMOUS_CODING
SBS	Chr11	26502113	A-T	HET	INTRON
SBS	Chr12	2618738	G-T	HET	INTERGENIC
SBS	Chr12	9422957	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16450
SBS	Chr2	12639521	G-A	HET	INTERGENIC
SBS	Chr2	14390626	A-C	HET	INTERGENIC
SBS	Chr2	33888834	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55340
SBS	Chr2	7184372	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	8956476	T-C	HET	INTRON
SBS	Chr3	10504334	G-A	HOMO	INTERGENIC
SBS	Chr3	31147127	T-G	HET	INTRON
SBS	Chr3	5069605	A-G	HET	INTERGENIC
SBS	Chr3	6823451	C-A	HET	INTERGENIC
SBS	Chr4	20223659	A-G	HET	INTERGENIC
SBS	Chr4	23449607	G-T	HET	INTERGENIC
SBS	Chr4	25536855	C-T	HET	INTRON
SBS	Chr4	25536857	A-G	HET	INTRON
SBS	Chr4	30373492	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51260
SBS	Chr4	32658107	C-G	HET	SYNONYMOUS_CODING
SBS	Chr4	8096351	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14460
SBS	Chr4	8096352	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14460
SBS	Chr5	22794492	C-A	HET	INTRON
SBS	Chr5	8340745	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g14670
SBS	Chr6	6660754	C-G	HET	INTERGENIC
SBS	Chr7	10650417	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	2597449	G-A	HET	INTRON
SBS	Chr7	5185455	C-T	HET	INTERGENIC
SBS	Chr7	8230060	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	18313969	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29790
SBS	Chr9	16404469	C-A	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2887805	2887806	1
Deletion	Chr5	3921096	3921099	3
Deletion	Chr3	4374208	4374228	20
Deletion	Chr12	6070229	6070230	1
Deletion	Chr11	6207920	6207921	1
Deletion	Chr7	7012063	7012064	1
Deletion	Chr1	7384535	7384536	1
Deletion	Chr4	7532229	7532231	2	LOC_Os04g13510
Deletion	Chr10	13441783	13441784	1
Deletion	Chr11	16553034	16553037	3
Deletion	Chr6	18138200	18138214	14
Deletion	Chr12	19386798	19386799	1
Deletion	Chr8	24072949	24072953	4
Deletion	Chr1	26553398	26553400	2
Deletion	Chr3	27218886	27218887	1
Deletion	Chr7	27847621	27847625	4	LOC_Os07g46610
Deletion	Chr2	30119658	30119659	1
Deletion	Chr2	32366699	32366705	6
Deletion	Chr3	35618340	35618358	18

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	27039209	27039209	1
Insertion	Chr11	4045184	4045184	1
Insertion	Chr4	7883407	7883407	1
Insertion	Chr4	9549950	9549950	1
Insertion	Chr5	1633003	1633003	1
Insertion	Chr5	24707854	24707854	1
Insertion	Chr7	11297620	11297639	20
Insertion	Chr8	2710766	2710771	6
Insertion	Chr9	2376895	2376897	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2517875	2518072	LOC_Os06g05550
Inversion	Chr1	3956765	4004506	LOC_Os01g08220
Inversion	Chr1	3956770	4004641	LOC_Os01g08220
Inversion	Chr6	19341724	19341913
Inversion	Chr1	19385032	19881568	LOC_Os01g35030

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	660019	Chr1	27759415
Translocation	Chr2	1012783	Chr1	19385031
Translocation	Chr8	6416545	Chr7	9479733	LOC_Os07g11630
Translocation	Chr8	12102039	Chr1	10160462	LOC_Os01g21600
Translocation	Chr8	12102046	Chr1	10182083	LOC_Os01g21600

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