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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16596545	T-C	HET	INTRON
SBS	Chr1	16966274	T-A	HET	INTRON
SBS	Chr1	23332079	G-A	HOMO	INTERGENIC
SBS	Chr1	24031943	G-A	HET	INTERGENIC
SBS	Chr10	12357932	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24110
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	3996801	A-G	HOMO	INTERGENIC
SBS	Chr11	11144807	T-G	HET	INTERGENIC
SBS	Chr11	11957729	A-C	HET	INTERGENIC
SBS	Chr11	11957731	A-C	HET	INTERGENIC
SBS	Chr12	10314515	C-A	HET	INTERGENIC
SBS	Chr12	25417522	A-G	HET	INTRON
SBS	Chr2	11756994	C-T	HET	INTRON
SBS	Chr2	26304188	T-G	HET	INTERGENIC
SBS	Chr2	27602523	T-G	HET	START_GAINED	LOC_Os02g45390
SBS	Chr4	20007915	C-T	HET	INTRON
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	29347884	T-A	HOMO	INTERGENIC
SBS	Chr4	8723131	G-C	HET	INTERGENIC
SBS	Chr5	15729675	G-C	HOMO	INTERGENIC
SBS	Chr6	31021301	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g51250
SBS	Chr7	19044128	T-C	HOMO	INTERGENIC
SBS	Chr7	19156138	C-T	HOMO	INTERGENIC
SBS	Chr7	26054138	T-A	HET	INTRON
SBS	Chr7	8821755	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15290
SBS	Chr8	20998817	C-A	HET	INTERGENIC
SBS	Chr8	24595340	G-A	HET	INTRON
SBS	Chr8	28330048	C-T	HOMO	INTERGENIC
SBS	Chr8	7212341	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g12260
SBS	Chr9	11827513	G-A	HET	INTERGENIC
SBS	Chr9	20875498	C-T	HOMO	INTERGENIC
SBS	Chr9	5862179	C-T	HET	INTERGENIC
SBS	Chr9	7083666	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3562081	3562092	11
Deletion	Chr10	3787789	3787794	5
Deletion	Chr4	5265949	5265956	7
Deletion	Chr1	5615001	5646000	31000	2
Deletion	Chr2	6143977	6143983	6
Deletion	Chr10	6213717	6213718	1
Deletion	Chr9	10944814	10944819	5
Deletion	Chr5	11861870	11861871	1	LOC_Os05g20250
Deletion	Chr2	12557771	12557800	29
Deletion	Chr7	13223998	13224000	2	LOC_Os07g23430
Deletion	Chr10	14775770	14775774	4	LOC_Os10g28400
Deletion	Chr11	14805499	14805525	26
Deletion	Chr9	17144079	17144081	2
Deletion	Chr5	18706226	18706251	25
Deletion	Chr10	20404743	20404758	15
Deletion	Chr8	20416908	20416911	3	LOC_Os08g32920
Deletion	Chr8	20955731	20955759	28	LOC_Os08g33560
Deletion	Chr7	21140306	21140312	6	LOC_Os07g35310
Deletion	Chr2	23533888	23533889	1
Deletion	Chr12	24326193	24326196	3
Deletion	Chr7	29036246	29036252	6
Deletion	Chr6	31182230	31182238	8	LOC_Os06g51480
Deletion	Chr4	32079612	32079618	6	LOC_Os04g53830
Deletion	Chr1	34057208	34057244	36
Deletion	Chr1	34130622	34130629	7
Deletion	Chr1	40392614	40392617	3	LOC_Os01g69904

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	3959845	3959846	2
Insertion	Chr12	4593924	4593925	2
Insertion	Chr7	13554994	13554994	1
Insertion	Chr9	71853	71853	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11643883	11748592
Inversion	Chr3	11643895	11748606
Inversion	Chr6	16565326	16731139	LOC_Os06g29060

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr4	11340727	Chr1	7494539
Translocation	Chr11	21327652	Chr3	25354095
Translocation	Chr11	28280604	Chr3	7009450

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