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Mutant Information

Mutant Name	FN4600-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4600-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	10611060	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20960
SBS	Chr10	17115972	C-T	HET	INTERGENIC
SBS	Chr10	18257483	G-A	HET	INTERGENIC
SBS	Chr10	598003	A-T	HET	INTERGENIC
SBS	Chr10	7122116	C-A	HET	INTRON
SBS	Chr10	7122120	G-T	HET	INTRON
SBS	Chr11	13359487	A-T	HOMO	INTERGENIC
SBS	Chr11	13359490	T-C	HOMO	INTERGENIC
SBS	Chr11	17637534	C-T	HOMO	INTRON
SBS	Chr11	17637535	C-T	HOMO	INTRON
SBS	Chr11	3775626	A-C	HET	INTERGENIC
SBS	Chr11	7275302	C-G	HET	INTERGENIC
SBS	Chr11	8592273	C-G	HET	INTERGENIC
SBS	Chr12	12261625	T-C	HET	UTR_5_PRIME
SBS	Chr12	21502884	A-C	HOMO	INTERGENIC
SBS	Chr2	15115336	G-A	HET	INTRON
SBS	Chr2	17241130	G-A	HET	INTERGENIC
SBS	Chr2	24651038	G-T	HOMO	UTR_5_PRIME
SBS	Chr2	2970759	C-T	HET	INTERGENIC
SBS	Chr2	29993519	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g49060
SBS	Chr3	13790945	C-A	HOMO	INTERGENIC
SBS	Chr3	14287441	T-G	HET	INTERGENIC
SBS	Chr3	15605938	T-C	HET	INTRON
SBS	Chr3	16732669	T-C	HET	INTERGENIC
SBS	Chr4	1404137	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03300
SBS	Chr4	17457755	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29380
SBS	Chr4	24653280	C-T	HET	INTERGENIC
SBS	Chr4	29110346	G-A	HET	UTR_5_PRIME
SBS	Chr4	35084353	G-T	HET	UTR_3_PRIME
SBS	Chr4	35084354	G-T	HET	UTR_3_PRIME
SBS	Chr4	8660649	C-G	HET	SYNONYMOUS_CODING
SBS	Chr5	10351688	C-T	HET	INTRON
SBS	Chr5	11984416	G-A	HET	INTRON
SBS	Chr5	14569724	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25140
SBS	Chr5	18777601	T-G	HET	INTERGENIC
SBS	Chr5	20699125	G-A	HET	INTERGENIC
SBS	Chr6	26611732	A-G	HET	INTERGENIC
SBS	Chr6	3677536	G-C	HET	STOP_GAINED	LOC_Os06g07600
SBS	Chr7	16059324	G-A	HOMO	INTERGENIC
SBS	Chr7	17684590	G-A	HET	INTERGENIC
SBS	Chr7	19998301	C-T	HET	INTERGENIC
SBS	Chr7	6708231	G-T	HET	INTERGENIC
SBS	Chr8	10006035	C-T	HET	INTERGENIC
SBS	Chr9	19803932	T-C	HET	INTERGENIC
SBS	Chr9	4399174	G-T	HET	INTERGENIC
SBS	Chr9	4399176	C-T	HET	INTERGENIC
SBS	Chr9	5971678	C-T	HET	INTERGENIC
SBS	Chr9	9462925	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15460

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	130379	130380	1
Deletion	Chr1	2098683	2098705	22	LOC_Os01g04660
Deletion	Chr2	2152829	2152830	1
Deletion	Chr2	4986340	4986341	1
Deletion	Chr6	5120437	5120440	3
Deletion	Chr6	7088644	7088645	1
Deletion	Chr7	7468067	7468068	1
Deletion	Chr7	8914710	8914721	11
Deletion	Chr7	9431764	9431765	1
Deletion	Chr9	9507596	9507628	32
Deletion	Chr4	9799757	9799760	3	LOC_Os04g17850
Deletion	Chr9	10737234	10737317	83
Deletion	Chr6	10962525	10962526	1
Deletion	Chr8	11100928	11100931	3
Deletion	Chr10	11687001	11716000	29000	3
Deletion	Chr2	12092138	12092139	1
Deletion	Chr10	12301280	12301286	6
Deletion	Chr7	12638812	12638820	8
Deletion	Chr7	18701297	18701298	1
Deletion	Chr11	19165562	19165563	1
Deletion	Chr5	19861243	19861262	19
Deletion	Chr10	20379004	20379026	22	LOC_Os10g38050
Deletion	Chr10	21954813	21954814	1
Deletion	Chr3	22171598	22171600	2
Deletion	Chr6	27006897	27006899	2
Deletion	Chr4	31607629	31607630	1
Deletion	Chr4	33095076	33095077	1
Deletion	Chr4	33604045	33604046	1
Deletion	Chr4	34302001	34331000	29000	4

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23748302	23748343	42
Insertion	Chr1	23960258	23960260	3	LOC_Os01g42270
Insertion	Chr10	20706354	20706369	16
Insertion	Chr10	6514458	6514458	1
Insertion	Chr3	17916095	17916124	30	LOC_Os03g31440
Insertion	Chr3	26569878	26569906	29
Insertion	Chr3	4675339	4675339	1
Insertion	Chr4	10884121	10884122	2
Insertion	Chr4	132580	132580	1
Insertion	Chr4	19845739	19845739	1
Insertion	Chr4	2610506	2610506	1
Insertion	Chr5	25545469	25545469	1
Insertion	Chr6	5487850	5487853	4
Insertion	Chr7	21626882	21626882	1
Insertion	Chr7	7927397	7927397	1
Insertion	Chr8	16650559	16650559	1
Insertion	Chr9	12615143	12615143	1
Insertion	Chr9	3159369	3159369	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	23834283	24014164
Inversion	Chr5	27642689	27642992	LOC_Os05g48220

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1003499	Chr9	2744631
Translocation	Chr8	17619660	Chr1	25416522
Translocation	Chr11	18098130	Chr1	21510416	LOC_Os11g31100
Translocation	Chr7	22979905	Chr4	33023288	LOC_Os04g38680
Translocation	Chr7	22980737	Chr4	33023286
Translocation	Chr3	33862419	Chr1	42565419

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