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Mutant Information

Mutant Name	FN4605-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4605-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11598240	T-C	HOMO
SBS	Chr10	7299882	G-A	HET		LOC_Os10g13500
SBS	Chr11	25724932	G-A	HOMO
SBS	Chr2	21192938	C-A	HET
SBS	Chr2	35167473	A-T	HET
SBS	Chr3	23131051	G-A	HOMO
SBS	Chr3	27199338	G-A	HET
SBS	Chr3	33558828	C-T	HET
SBS	Chr3	35924045	A-T	HET
SBS	Chr3	8263823	C-A	HET
SBS	Chr3	8964369	G-T	HET
SBS	Chr4	24892239	A-T	HET
SBS	Chr5	27260230	G-T	HOMO
SBS	Chr7	23715329	C-T	HOMO		LOC_Os07g39570
SBS	Chr7	26137773	C-T	HET
SBS	Chr8	686979	T-G	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2659342	2659342	1
Deletion	Chr12	2729057	2729057	1
Deletion	Chr8	3409183	3409183	1	LOC_Os08g06170
Deletion	Chr4	3876535	3876605	71	LOC_Os04g07300
Deletion	Chr6	4319941	4319941	1
Deletion	Chr7	4792451	4792451	1
Deletion	Chr4	5887427	5887427	1	LOC_Os04g10850
Deletion	Chr10	6346772	6346844	73	LOC_Os10g11454
Deletion	Chr3	6428284	6428292	9
Deletion	Chr1	8178896	8178896	1
Deletion	Chr1	9104744	9104744	1
Deletion	Chr8	9868194	9868197	4
Deletion	Chr8	10007114	10007203	90
Deletion	Chr4	13117972	13117974	3
Deletion	Chr6	16238429	16238429	1
Deletion	Chr12	17193510	17193512	3
Deletion	Chr12	18672291	18672297	7
Deletion	Chr4	18890053	18890053	1
Deletion	Chr10	20121923	20121930	8

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	12217628	12217663	36
Insertion	Chr12	22116757	22116766	10
Insertion	Chr2	5368619	5368620	2
Insertion	Chr2	5699213	5699218	6
Insertion	Chr4	23578490	23578490	1
Insertion	Chr5	17267898	17267898	1
Insertion	Chr8	10382884	10382884	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14064904	14065097
Inversion	Chr10	18654832	19391248
Inversion	Chr1	25325330	25325469

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10929555	Chr3	2045276
Translocation	Chr10	18654837	Chr6	14025560
Translocation	Chr10	19391250	Chr6	14017874	LOC_Os06g23990