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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1003954	G-A	HET	SPLICE_SITE_REGION
SBS	Chr1	29941340	T-G	HET	INTERGENIC
SBS	Chr1	42458863	T-C	HET	INTERGENIC
SBS	Chr2	20456708	G-T	HET	INTERGENIC
SBS	Chr2	32080010	G-C	HOMO	INTRON
SBS	Chr3	14955497	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	7420905	C-T	HET	INTRON
SBS	Chr4	14475187	T-C	HET	INTERGENIC
SBS	Chr4	15973496	G-A	HET	INTERGENIC
SBS	Chr4	22642831	C-T	HET	INTERGENIC
SBS	Chr5	9203855	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16260
SBS	Chr5	17887235	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30820
SBS	Chr6	7423419	A-T	HET	INTERGENIC
SBS	Chr6	9558301	C-T	HET	INTERGENIC
SBS	Chr6	13929229	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	27222122	T-C	HET	INTRON
SBS	Chr8	2832028	T-C	HOMO	INTERGENIC
SBS	Chr8	7124535	C-T	HOMO	INTERGENIC
SBS	Chr9	8103395	G-A	HOMO	INTERGENIC
SBS	Chr9	19170480	T-C	HET	INTERGENIC
SBS	Chr10	5550104	T-A	HET	INTERGENIC
SBS	Chr10	10764221	A-T	HOMO	INTERGENIC
SBS	Chr10	11156211	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g21730
SBS	Chr10	21186802	G-T	HET	INTERGENIC
SBS	Chr10	22143590	C-T	HET	INTERGENIC
SBS	Chr11	20576575	A-G	HET	INTRON
SBS	Chr11	25665457	A-G	HET	INTERGENIC
SBS	Chr12	2190529	A-G	HOMO	INTERGENIC
SBS	Chr12	21186054	G-C	HOMO	INTERGENIC
SBS	Chr12	26806715	A-G	HET	START_GAINED

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1086910	1086927	17
Deletion	Chr6	1922871	1922874	3
Deletion	Chr9	4183164	4183165	1
Deletion	Chr6	7419622	7419625	3
Deletion	Chr9	8348779	8348780	1
Deletion	Chr6	8599429	8599433	4	LOC_Os06g15170
Deletion	Chr10	11209388	11209389	1
Deletion	Chr7	11894888	11894889	1
Deletion	Chr10	12158976	12158978	2
Deletion	Chr1	13364001	13485000	121000	19
Deletion	Chr7	15393758	15393768	10
Deletion	Chr12	16920162	16920163	1
Deletion	Chr4	19255663	19255744	81
Deletion	Chr6	19300926	19300959	33
Deletion	Chr11	21967687	21967695	8
Deletion	Chr5	25238564	25238565	1
Deletion	Chr8	27020201	27020203	2
Deletion	Chr1	29683016	29683021	5
Deletion	Chr4	30834686	30834687	1
Deletion	Chr3	33402840	33402841	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	3255931	3255932	2
Insertion	Chr1	42458763	42458824	62
Insertion	Chr1	42475794	42475841	48
Insertion	Chr4	1058037	1058037	1
Insertion	Chr8	9763781	9763831	51
Insertion	Chr8	22240991	22240991	1
Insertion	Chr8	24072949	24072954	6
Insertion	Chr9	5571165	5571165	1
Insertion	Chr10	1254945	1254945	1
Insertion	Chr11	6172252	6172252	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr1	19899452	19902391
Inversion	Chr1	19899457	19902400
Inversion	Chr1	30513388	30738551
Inversion	Chr1	30738555	30749604

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	6618802	Chr6	13457045	LOC_Os10g11930

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