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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3671083	A-T	HET	INTERGENIC
SBS	Chr2	22919879	T-A	HET	INTRON
SBS	Chr2	35195060	G-C	HOMO	INTERGENIC
SBS	Chr3	12783890	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g22300
SBS	Chr3	17164124	C-G	HET	INTRON
SBS	Chr4	15028566	T-G	HET	INTERGENIC
SBS	Chr4	21309406	T-G	HET	INTERGENIC
SBS	Chr4	22824960	G-A	HET	INTERGENIC
SBS	Chr4	26522456	G-A	HET	INTERGENIC
SBS	Chr5	2661908	G-A	HET	INTERGENIC
SBS	Chr5	5154448	C-A	HET	INTRON
SBS	Chr5	16112108	T-C	HET	UTR_3_PRIME
SBS	Chr5	16971454	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28940
SBS	Chr5	29956508	G-C	HET	INTRON
SBS	Chr7	367837	A-C	HET	INTRON
SBS	Chr8	9601011	G-A	HOMO	INTERGENIC
SBS	Chr8	13998694	G-T	HET	INTERGENIC
SBS	Chr8	17598255	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	13521505	C-T	HOMO	INTRON
SBS	Chr9	15678365	G-A	HET	INTERGENIC
SBS	Chr10	1528046	T-G	HET	INTERGENIC
SBS	Chr10	4310772	G-T	HET	INTRON
SBS	Chr11	4006952	G-A	HOMO	INTRON
SBS	Chr11	10378174	G-A	HOMO	INTERGENIC
SBS	Chr11	25328023	C-A	HET	INTERGENIC
SBS	Chr12	15099880	C-A	HET	INTERGENIC
SBS	Chr12	15099881	A-C	HET	INTERGENIC
SBS	Chr12	20364105	C-T	HOMO	INTERGENIC
SBS	Chr12	26848873	G-A	HET	INTERGENIC
SBS	Chr12	27064636	A-G	HET	INTERGENIC
SBS	Chr12	27064637	G-T	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1137291	1137296	5	LOC_Os01g02990
Deletion	Chr1	1199081	1199085	4	LOC_Os01g03110
Deletion	Chr7	2195673	2195677	4
Deletion	Chr9	2650001	2663000	13000	2
Deletion	Chr1	3322721	3322725	4
Deletion	Chr5	3529954	3529958	4	LOC_Os05g06750
Deletion	Chr2	4913001	4934000	21000	5
Deletion	Chr4	5051894	5051896	2
Deletion	Chr3	7529001	7550000	21000	5
Deletion	Chr10	8571774	8571777	3
Deletion	Chr8	9151117	9151120	3	LOC_Os08g15100
Deletion	Chr3	11698110	11699771	1661	LOC_Os03g20680
Deletion	Chr5	12394001	12415000	21000	4
Deletion	Chr4	12984036	12984048	12
Deletion	Chr4	14569277	14569279	2
Deletion	Chr3	15121986	15121991	5
Deletion	Chr10	16997755	16997756	1
Deletion	Chr9	17262185	17262189	4
Deletion	Chr2	18604939	18604973	34
Deletion	Chr5	18671082	18671591	509	LOC_Os05g32040
Deletion	Chr1	20490251	20490263	12
Deletion	Chr7	20635001	20682000	47000	11
Deletion	Chr8	20683665	20683666	1
Deletion	Chr4	22564450	22564453	3
Deletion	Chr11	25303103	25303109	6
Deletion	Chr4	28541013	28541024	11
Deletion	Chr4	29617072	29617084	12
Deletion	Chr1	40026527	40026549	22

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	506212	506213	2	LOC_Os01g01920
Insertion	Chr1	21904398	21904399	2
Insertion	Chr9	17572877	17572884	8
Insertion	Chr11	19603304	19603306	3
Insertion	Chr8	16701441	16701442	2
Insertion	Chr12	3797506	3797506	1
Insertion	Chr2	73997	73997	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	23550811	23985102	LOC_Os02g38980
Inversion	Chr2	23985105	24166975	LOC_Os02g39970
Inversion	Chr7	26213866	26304444	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	166474	Chr3	1013842
Translocation	Chr2	473794	Chr1	24174093
Translocation	Chr12	8904622	Chr10	18963096
Translocation	Chr11	13095234	Chr5	20699939
Translocation	Chr8	22489831	Chr6	14875379
Translocation	Chr11	28407010	Chr7	15855152

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