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| Mutant Information |
|---|
| Mutant Name | FN4610-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4610-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 17952899 | A-C | HOMO | ||
| SBS | Chr10 | 5359141 | T-C | HOMO | ||
| SBS | Chr10 | 9656985 | C-T | HET | ||
| SBS | Chr11 | 14566495 | G-A | HET | ||
| SBS | Chr12 | 23257901 | C-G | HET | ||
| SBS | Chr12 | 8310469 | T-C | HET | ||
| SBS | Chr2 | 1179447 | T-C | HET | ||
| SBS | Chr3 | 19956519 | C-T | HOMO | ||
| SBS | Chr3 | 24366011 | G-T | HOMO | ||
| SBS | Chr3 | 3316796 | A-T | HET | LOC_Os03g06580 | |
| SBS | Chr4 | 29696035 | G-A | HOMO | ||
| SBS | Chr5 | 27177789 | G-A | HOMO | ||
| SBS | Chr5 | 4742672 | C-T | HOMO | ||
| SBS | Chr6 | 16673652 | T-A | HOMO | LOC_Os06g29210 | |
| SBS | Chr6 | 16674118 | C-T | HOMO | ||
| SBS | Chr6 | 16674126 | G-T | HOMO | LOC_Os06g29210 | |
| SBS | Chr6 | 19908800 | T-C | HOMO | LOC_Os06g34190 | |
| SBS | Chr6 | 26650775 | C-T | HOMO | ||
| SBS | Chr6 | 30219495 | G-T | HET | ||
| SBS | Chr7 | 14116311 | T-A | HOMO | ||
| SBS | Chr7 | 20421977 | A-G | HOMO | ||
| SBS | Chr7 | 20637915 | G-A | HET | ||
| SBS | Chr7 | 28125523 | C-T | HET | ||
| SBS | Chr7 | 5875017 | G-T | HET | ||
| SBS | Chr8 | 8634035 | C-T | HOMO | ||
| SBS | Chr9 | 17940540 | A-T | HOMO |
Deletions: 30
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1352342 | 1352342 | 1 | |
| Deletion | Chr7 | 2476085 | 2476086 | 2 | |
| Deletion | Chr3 | 3059092 | 3059100 | 9 | |
| Deletion | Chr10 | 4568126 | 4568126 | 1 | |
| Deletion | Chr8 | 5877978 | 5877980 | 3 | |
| Deletion | Chr5 | 5979340 | 5979345 | 6 | |
| Deletion | Chr8 | 7866179 | 7866222 | 44 | |
| Deletion | Chr3 | 10735738 | 10735738 | 1 | |
| Deletion | Chr12 | 11626325 | 11626342 | 18 | LOC_Os12g19970 |
| Deletion | Chr2 | 11682459 | 11682459 | 1 | |
| Deletion | Chr9 | 13612993 | 13612993 | 1 | |
| Deletion | Chr10 | 15594665 | 15594665 | 1 | |
| Deletion | Chr12 | 15797069 | 15797077 | 9 | |
| Deletion | Chr3 | 18519035 | 18519043 | 9 | |
| Deletion | Chr2 | 18648301 | 18648303 | 3 | |
| Deletion | Chr11 | 19855512 | 19855512 | 1 | |
| Deletion | Chr7 | 20486545 | 20486551 | 7 | |
| Deletion | Chr12 | 20717711 | 20717730 | 20 | |
| Deletion | Chr11 | 20976123 | 20976123 | 1 | LOC_Os11g35730 |
| Deletion | Chr11 | 23472489 | 23472512 | 24 | |
| Deletion | Chr1 | 24711448 | 24711456 | 9 | |
| Deletion | Chr2 | 25936520 | 25936520 | 1 | |
| Deletion | Chr4 | 28682998 | 28682998 | 1 | |
| Deletion | Chr11 | 28880001 | 28965000 | 85000 | 17 |
| Deletion | Chr11 | 28975001 | 29013000 | 38000 | 7 |
| Deletion | Chr2 | 33908542 | 33908551 | 10 | |
| Deletion | Chr1 | 34921719 | 34921719 | 1 | |
| Deletion | Chr1 | 36148618 | 36148618 | 1 | |
| Deletion | Chr1 | 36157660 | 36157665 | 6 | |
| Deletion | Chr1 | 36291783 | 36291788 | 6 |
Insertions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 16895894 | 16895894 | 1 | |
| Insertion | Chr10 | 15482047 | 15482048 | 2 | |
| Insertion | Chr10 | 19042513 | 19042544 | 32 | |
| Insertion | Chr11 | 25063605 | 25063654 | 50 | |
| Insertion | Chr12 | 18017216 | 18017219 | 4 | |
| Insertion | Chr2 | 18680854 | 18680854 | 1 | LOC_Os02g31190 |
| Insertion | Chr3 | 1672915 | 1672926 | 12 | LOC_Os03g03760 |
| Insertion | Chr3 | 17537746 | 17537773 | 28 | |
| Insertion | Chr6 | 23566507 | 23566507 | 1 | |
| Insertion | Chr9 | 118607 | 118608 | 2 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 8943799 | Chr1 | 2012119 | |
| Translocation | Chr12 | 15482032 | Chr11 | 19390092 | |
| Translocation | Chr7 | 24767916 | Chr1 | 35995775 | LOC_Os01g62170 |
| Translocation | Chr7 | 24768076 | Chr1 | 35995687 | 2 |
| Translocation | Chr11 | 28880055 | Chr8 | 18186 |