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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12239142	C-T	HOMO	INTRON
SBS	Chr1	25587730	G-A	HOMO	INTRON
SBS	Chr12	26149498	A-C	HET	INTERGENIC
SBS	Chr2	1247636	T-C	HET	INTERGENIC
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	24590447	T-C	HET	INTERGENIC
SBS	Chr2	29108542	G-A	HET	UTR_5_PRIME
SBS	Chr2	4211588	G-A	HET	INTERGENIC
SBS	Chr2	5056497	T-C	HOMO	INTRON
SBS	Chr2	761089	T-C	HET	INTERGENIC
SBS	Chr3	25981579	G-A	HOMO	INTRON
SBS	Chr3	30101449	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g52460
SBS	Chr3	34401087	T-C	HOMO	INTERGENIC
SBS	Chr3	4570979	G-T	HET	UTR_5_PRIME
SBS	Chr4	12642260	C-G	HET	INTERGENIC
SBS	Chr4	13027194	C-T	HET	INTERGENIC
SBS	Chr4	8986521	G-C	HET	INTRON
SBS	Chr5	16340179	C-T	HET	INTERGENIC
SBS	Chr5	19724805	A-G	HET	INTRON
SBS	Chr5	25618204	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44030
SBS	Chr5	26368039	T-A	HET	INTERGENIC
SBS	Chr6	12972943	G-A	HET	INTERGENIC
SBS	Chr6	5591521	C-T	HET	INTRON
SBS	Chr6	6316873	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g11880
SBS	Chr7	20916739	T-A	HET	INTERGENIC
SBS	Chr7	24100471	G-A	HET	INTERGENIC
SBS	Chr7	27090933	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	3724126	A-G	HET	INTERGENIC
SBS	Chr8	18930938	G-T	HET	INTERGENIC
SBS	Chr8	20823515	G-T	HET	INTRON
SBS	Chr8	27316498	T-C	HET	INTRON
SBS	Chr8	27638003	A-G	HET	INTRON
SBS	Chr9	8540291	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14450

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	657176	657188	12
Deletion	Chr4	2585323	2585330	7
Deletion	Chr2	4441673	4441677	4
Deletion	Chr12	4922451	4922464	13
Deletion	Chr4	5842142	5842156	14
Deletion	Chr10	8942585	8942586	1
Deletion	Chr6	15921958	15921960	2
Deletion	Chr2	17798057	17798067	10
Deletion	Chr2	18426070	18432668	6598	LOC_Os02g30880
Deletion	Chr12	20728406	20728407	1
Deletion	Chr10	21056875	21056880	5
Deletion	Chr10	21401421	21401422	1
Deletion	Chr8	22228665	22228679	14
Deletion	Chr2	23088151	23088152	1
Deletion	Chr3	24647129	24648656	1527
Deletion	Chr12	24773941	24773942	1	LOC_Os12g40070
Deletion	Chr5	25086957	25086959	2
Deletion	Chr7	26517098	26517100	2	LOC_Os07g44370
Deletion	Chr2	26940955	26940972	17
Deletion	Chr2	27651297	27651303	6
Deletion	Chr4	29040496	29040497	1
Deletion	Chr3	30194802	30194809	7
Deletion	Chr1	40107058	40107060	2	LOC_Os01g69030
Deletion	Chr1	41155684	41155689	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26307065	26307065	1	LOC_Os01g46260
Insertion	Chr4	8338683	8338683	1
Insertion	Chr5	2560231	2560231	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4530085	6273395	LOC_Os04g08430
Inversion	Chr3	5995328	6346575	LOC_Os03g11560
Inversion	Chr3	5995339	6346575	LOC_Os03g11560
Inversion	Chr3	29672968	30101492	LOC_Os03g52460
Inversion	Chr3	29700551	30101600	LOC_Os03g52460

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9479687	Chr3	29672978
Translocation	Chr11	9479694	Chr3	29700501	LOC_Os11g17090
Translocation	Chr10	22557173	Chr2	830159	LOC_Os10g41930
Translocation	Chr10	22557299	Chr2	820606	2
Translocation	Chr3	24647142	Chr2	820655	LOC_Os02g02390
Translocation	Chr3	24648646	Chr2	830160
Translocation	Chr6	27804585	Chr3	25799371

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