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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14389321	A-G	HET	INTERGENIC
SBS	Chr1	24766179	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43330
SBS	Chr1	27478215	T-C	HOMO	INTERGENIC
SBS	Chr2	87940	A-T	HET	INTRON
SBS	Chr2	1927267	T-G	HOMO	INTERGENIC
SBS	Chr2	24727078	G-T	HOMO	INTERGENIC
SBS	Chr2	26865530	G-A	HOMO	INTERGENIC
SBS	Chr2	29118139	A-G	HET	INTRON
SBS	Chr2	35457705	A-T	HET	INTERGENIC
SBS	Chr3	9770728	G-A	HET	INTERGENIC
SBS	Chr3	9862843	G-C	HET	INTERGENIC
SBS	Chr3	13761831	C-G	HET	INTERGENIC
SBS	Chr4	16724492	G-A	HET	INTERGENIC
SBS	Chr4	26502062	C-A	HOMO	INTRON
SBS	Chr4	34054938	G-A	HET	INTRON
SBS	Chr5	19468723	G-A	HET	INTERGENIC
SBS	Chr5	24886442	G-A	HET	INTERGENIC
SBS	Chr5	27418315	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g47830
SBS	Chr5	27418316	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27418317	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g47830
SBS	Chr6	2515719	T-C	HET	INTERGENIC
SBS	Chr6	6458084	G-T	HET	INTERGENIC
SBS	Chr6	13426923	G-A	HET	INTERGENIC
SBS	Chr6	14370946	T-A	HET	INTERGENIC
SBS	Chr6	21110976	C-T	HET	INTERGENIC
SBS	Chr7	15855954	A-G	HOMO	INTERGENIC
SBS	Chr7	16173579	G-T	HET	INTERGENIC
SBS	Chr7	19940594	C-G	HET	INTRON
SBS	Chr8	7343503	A-G	HET	INTRON
SBS	Chr8	7922414	G-A	HET	INTRON
SBS	Chr8	21450296	T-A	HET	SYNONYMOUS_CODING
SBS	Chr9	6379338	A-C	HET	INTRON
SBS	Chr9	19364418	G-C	HOMO	INTRON
SBS	Chr10	1400651	A-C	HET	INTERGENIC
SBS	Chr10	8473564	C-T	HET	INTERGENIC
SBS	Chr10	13507140	A-T	HET	INTERGENIC
SBS	Chr11	9044364	G-A	HET	INTERGENIC
SBS	Chr12	21835249	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2005152	2005167	15	LOC_Os02g04510
Deletion	Chr8	8107180	8109510	2330	2
Deletion	Chr11	11575704	11575705	1
Deletion	Chr5	12711736	12711737	1
Deletion	Chr2	14739646	14739647	1
Deletion	Chr10	14969269	14969286	17
Deletion	Chr4	15854345	15854357	12
Deletion	Chr3	16592145	16592154	9
Deletion	Chr2	17288629	17289650	1021
Deletion	Chr4	20072402	20072408	6
Deletion	Chr9	20085647	20085653	6
Deletion	Chr8	22129501	22129513	12
Deletion	Chr8	25393389	25393391	2
Deletion	Chr4	26269956	26269961	5	LOC_Os04g44370
Deletion	Chr8	26805657	26805674	17
Deletion	Chr5	27408803	27408807	4
Deletion	Chr3	33861248	33861255	7
Deletion	Chr2	34610001	34659000	49000	8
Deletion	Chr3	36102184	36102195	11

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	27538265	27538265	1
Insertion	Chr7	4734184	4734188	5
Insertion	Chr3	25293346	25293347	2	LOC_Os03g44835
Insertion	Chr6	22079691	22079692	2
Insertion	Chr12	1050088	1050088	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	74004	34659351
Inversion	Chr2	84855	34611838	LOC_Os02g56510
Inversion	Chr6	4571627	6458416	2
Inversion	Chr5	18788661	18853155
Inversion	Chr6	21320736	21329886	LOC_Os06g36340
Inversion	Chr6	21320779	21329891	LOC_Os06g36340

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	84873	Chr1	20641656	LOC_Os01g37000
Translocation	Chr2	85135	Chr1	20641649	LOC_Os01g37000
Translocation	Chr8	8311329	Chr2	17289650	2
Translocation	Chr8	8311345	Chr2	17288630	2

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