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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1204934	C-T	HET	INTERGENIC
SBS	Chr1	12493849	G-C	HET	INTRON
SBS	Chr1	15396750	T-C	HET	INTERGENIC
SBS	Chr1	36276400	A-C	HOMO	INTERGENIC
SBS	Chr10	2035149	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04316
SBS	Chr10	9042949	T-C	HOMO	INTERGENIC
SBS	Chr11	15245061	G-C	HET	INTERGENIC
SBS	Chr11	16612988	C-T	HET	INTRON
SBS	Chr11	23993219	G-A	HET	INTERGENIC
SBS	Chr11	25775289	T-A	HOMO	INTERGENIC
SBS	Chr11	2807928	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g05950
SBS	Chr11	7880906	G-A	HET	INTERGENIC
SBS	Chr12	14673249	C-T	HET	INTERGENIC
SBS	Chr12	21305451	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g35000
SBS	Chr12	6743358	A-G	HET	INTERGENIC
SBS	Chr3	10498721	T-C	HET	INTERGENIC
SBS	Chr3	14797151	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25869
SBS	Chr3	14797152	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25869
SBS	Chr3	15798064	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27540
SBS	Chr3	24462795	G-T	HET	INTERGENIC
SBS	Chr3	27124602	G-T	HET	UTR_3_PRIME
SBS	Chr4	21663152	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g35560
SBS	Chr4	34825875	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58570
SBS	Chr5	26141798	T-C	HET	INTERGENIC
SBS	Chr5	4582177	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08400
SBS	Chr6	6963506	T-A	HET	INTERGENIC
SBS	Chr7	16720627	G-A	HET	INTERGENIC
SBS	Chr7	18936526	G-T	HET	INTRON
SBS	Chr7	19822124	G-A	HET	INTERGENIC
SBS	Chr7	8716231	A-G	HET	INTERGENIC
SBS	Chr7	9300138	C-T	HET	INTRON
SBS	Chr8	18572432	C-T	HET	INTERGENIC
SBS	Chr8	7756405	G-A	HET	INTERGENIC
SBS	Chr9	20008035	C-A	HOMO	INTERGENIC
SBS	Chr9	22036312	T-G	HET	INTRON
SBS	Chr9	8922241	T-A	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7619109	7619122	13	LOC_Os01g13610
Deletion	Chr11	7875141	7875154	13
Deletion	Chr10	8511385	8511393	8
Deletion	Chr6	9012748	9012751	3	LOC_Os06g15870
Deletion	Chr10	9713150	9713153	3
Deletion	Chr3	14494104	14494111	7
Deletion	Chr7	19368093	19368102	9
Deletion	Chr9	22039170	22039171	1	LOC_Os09g38310
Deletion	Chr8	22791122	22791123	1
Deletion	Chr5	25157207	25157211	4	LOC_Os05g43230
Deletion	Chr1	29717347	29717354	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	20546640	20546641	2
Insertion	Chr2	35526121	35526122	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3360266	3769469	LOC_Os08g06720
Inversion	Chr12	3410882	3734734	LOC_Os12g06980
Inversion	Chr12	3410896	3734747	LOC_Os12g06980
Inversion	Chr1	14866653	14878139	2
Inversion	Chr1	29052154	30046085	LOC_Os01g50610

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1849457	Chr1	25578026
Translocation	Chr12	7498523	Chr4	9394936
Translocation	Chr9	9343781	Chr2	6996379
Translocation	Chr10	9749226	Chr1	29052198	LOC_Os01g50610
Translocation	Chr10	9750109	Chr1	30046084
Translocation	Chr11	21597380	Chr8	14798004	LOC_Os08g24500
Translocation	Chr8	27061647	Chr1	14876836	LOC_Os01g26240

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