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Mutant Information

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	11997752	G-A	HET
SBS	Chr1	16082508	C-T	HET
SBS	Chr1	19649944	G-A	HET	LOC_Os01g35504
SBS	Chr1	24528793	G-T	HET
SBS	Chr1	24528794	C-T	HET
SBS	Chr1	43140227	A-G	HOMO
SBS	Chr1	9088708	C-A	HOMO
SBS	Chr10	5530649	C-G	HOMO
SBS	Chr10	6670559	G-T	HET
SBS	Chr10	8023468	T-C	HET
SBS	Chr11	9401229	C-T	HET
SBS	Chr12	16907798	A-T	HET
SBS	Chr2	12776055	C-T	HOMO
SBS	Chr2	14469978	G-T	HET
SBS	Chr2	26048495	A-G	HET
SBS	Chr2	29006669	G-A	HET	LOC_Os02g47480
SBS	Chr2	30841087	C-G	HET
SBS	Chr2	6744115	A-G	HET
SBS	Chr2	9351480	C-G	HET
SBS	Chr3	20781834	A-G	HET
SBS	Chr3	21694930	G-A	HET
SBS	Chr4	10347369	G-A	HET
SBS	Chr4	11906748	C-T	HET	LOC_Os04g21150
SBS	Chr4	22469191	C-T	HET
SBS	Chr4	23239996	C-A	HET
SBS	Chr4	25573787	C-A	HET
SBS	Chr4	27414593	C-T	HET
SBS	Chr4	32212978	C-T	HET
SBS	Chr4	368295	A-G	HOMO
SBS	Chr5	16862392	C-T	HOMO
SBS	Chr5	19244169	A-T	HET
SBS	Chr5	21076856	C-T	HET
SBS	Chr5	23642995	G-T	HET
SBS	Chr5	23845346	G-T	HET
SBS	Chr5	2952793	T-C	HOMO
SBS	Chr6	25217570	G-A	HET
SBS	Chr6	4256403	G-A	HOMO
SBS	Chr7	10404487	C-T	HET
SBS	Chr7	18387717	C-T	HET
SBS	Chr7	26939431	C-T	HET
SBS	Chr7	27555883	A-C	HET
SBS	Chr7	28369899	T-C	HET
SBS	Chr8	12088753	G-A	HOMO	LOC_Os08g20170
SBS	Chr8	12088754	C-A	HOMO
SBS	Chr8	12088755	T-A	HOMO	LOC_Os08g20170
SBS	Chr9	21840101	G-A	HET

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	77060	77060	1
Deletion	Chr9	298544	298545	2
Deletion	Chr4	1528715	1528722	8
Deletion	Chr9	1938415	1938465	51
Deletion	Chr3	3237018	3237018	1
Deletion	Chr9	4234246	4234252	7	LOC_Os09g08170
Deletion	Chr4	6378642	6378685	44
Deletion	Chr4	6777027	6777027	1
Deletion	Chr12	8727722	8727725	4	LOC_Os12g15314
Deletion	Chr2	9207081	9207081	1
Deletion	Chr10	9326822	9326824	3	LOC_Os10g18360
Deletion	Chr6	9340933	9340934	2
Deletion	Chr1	9353794	9353797	4
Deletion	Chr12	10225001	10238000	13000	2
Deletion	Chr12	10386001	10481000	95000	10
Deletion	Chr8	11541515	11541515	1
Deletion	Chr10	13750055	13750060	6
Deletion	Chr1	13873512	13873512	1	LOC_Os01g24630
Deletion	Chr3	16307001	16344000	37000	3
Deletion	Chr6	19060644	19060644	1
Deletion	Chr4	24713489	24713489	1	LOC_Os04g41690
Deletion	Chr12	27036813	27036814	2
Deletion	Chr3	28647001	28660000	13000	4
Deletion	Chr5	29701218	29701218	1
Deletion	Chr1	35066001	35114000	48000	7
Deletion	Chr1	35119001	35272000	153000	23
Deletion	Chr1	35285001	35324000	39000	7
Deletion	Chr1	35326001	35354000	28000	5

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21329849	21329849	1	LOC_Os01g38070
Insertion	Chr11	20216643	20216644	2
Insertion	Chr11	25271686	25271686	1
Insertion	Chr2	8773389	8773389	1
Insertion	Chr3	25905419	25905515	97
Insertion	Chr3	33993649	33993649	1
Insertion	Chr3	5540969	5540969	1
Insertion	Chr3	5845687	5845687	1
Insertion	Chr4	10337162	10337162	1
Insertion	Chr4	18043642	18043642	1
Insertion	Chr4	24456019	24456057	39	LOC_Os04g41220
Insertion	Chr4	9227864	9227864	1
Insertion	Chr5	1982410	1982417	8
Insertion	Chr6	18652730	18652730	1
Insertion	Chr6	9968314	9968314	1
Insertion	Chr7	2382367	2382367	1
Insertion	Chr7	26463402	26463403	2
Insertion	Chr7	28627275	28627275	1
Insertion	Chr8	15197944	15197955	12	LOC_Os08g25030
Insertion	Chr8	4767461	4767462	2
Insertion	Chr9	7373172	7373218	47

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1305619	1600648	2
Inversion	Chr4	11534209	12186494	2
Inversion	Chr2	34840853	35673892
Inversion	Chr2	34840860	35673900

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1305610	Chr3	16359956	LOC_Os07g03260
Translocation	Chr7	1600647	Chr1	32620013	2
Translocation	Chr7	2882524	Chr3	16360511	LOC_Os07g05950
Translocation	Chr7	2882532	Chr1	32620005	2
Translocation	Chr7	2882873	Chr3	16344535	LOC_Os07g05950
Translocation	Chr7	2882880	Chr3	16359980	LOC_Os07g05950
Translocation	Chr12	8728445	Chr1	35371274

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