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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6390385	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11810
SBS	Chr1	25756332	G-A	HET	INTERGENIC
SBS	Chr1	34123016	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g59040
SBS	Chr2	17923325	G-A	HET	INTRON
SBS	Chr2	34566539	A-T	HET	INTERGENIC
SBS	Chr3	9688704	G-C	HET	INTERGENIC
SBS	Chr3	27898195	T-G	HET	INTERGENIC
SBS	Chr4	2141411	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04490
SBS	Chr4	7095818	C-A	HET	INTERGENIC
SBS	Chr4	7238808	G-A	HET	INTERGENIC
SBS	Chr4	15375532	G-A	HET	INTERGENIC
SBS	Chr4	20585648	T-C	HOMO	INTERGENIC
SBS	Chr4	22072944	G-A	HOMO	INTERGENIC
SBS	Chr5	923693	G-A	HOMO	INTRON
SBS	Chr5	7395014	A-G	HET	INTERGENIC
SBS	Chr5	27824113	T-A	HET	INTRON
SBS	Chr5	28040367	C-T	HET	UTR_3_PRIME
SBS	Chr5	28040373	C-T	HET	UTR_3_PRIME
SBS	Chr6	20780961	T-C	HOMO	INTERGENIC
SBS	Chr6	28393161	A-T	HET	INTRON
SBS	Chr6	29062421	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	29131662	C-T	HET	INTERGENIC
SBS	Chr7	9903693	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16850
SBS	Chr7	17505771	T-C	HOMO	INTRON
SBS	Chr8	5633966	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g09750
SBS	Chr8	9723846	C-A	HET	INTERGENIC
SBS	Chr9	4772039	G-C	HOMO	INTERGENIC
SBS	Chr9	14121956	G-C	HET	INTERGENIC
SBS	Chr9	19621206	G-C	HOMO	INTRON
SBS	Chr9	21538632	C-T	HOMO	INTRON
SBS	Chr10	5468153	G-A	HET	INTERGENIC
SBS	Chr10	12213495	G-A	HET	INTERGENIC
SBS	Chr12	9957165	G-A	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1739254	1739257	3	LOC_Os01g04010
Deletion	Chr8	2618311	2618312	1
Deletion	Chr7	4233450	4233451	1
Deletion	Chr7	4641098	4641123	25
Deletion	Chr2	4711786	4711801	15	LOC_Os02g09170
Deletion	Chr4	5309452	5309453	1
Deletion	Chr4	7302454	7302463	9
Deletion	Chr9	7422906	7422907	1	LOC_Os09g12890
Deletion	Chr10	7619273	7619275	2
Deletion	Chr4	7779919	7779920	1
Deletion	Chr4	8528083	8544699	16616	LOC_Os04g15690
Deletion	Chr11	10932053	10932054	1
Deletion	Chr1	13020434	13020438	4	LOC_Os01g23160
Deletion	Chr4	14315437	14315440	3
Deletion	Chr3	14822336	14822378	42
Deletion	Chr1	15065781	15065784	3
Deletion	Chr8	19737998	19738028	30
Deletion	Chr5	20019132	20019138	6
Deletion	Chr11	20558525	20558534	9
Deletion	Chr7	22872247	22872248	1
Deletion	Chr6	25198287	25198293	6	LOC_Os06g41980
Deletion	Chr12	26229180	26229184	4
Deletion	Chr8	27955480	27955486	6
Deletion	Chr3	30500020	30500027	7
Deletion	Chr2	31487063	31487071	8
Deletion	Chr2	32613391	32613402	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	10236211	10236214	4
Insertion	Chr3	12114390	12114391	2
Insertion	Chr4	20019895	20019896	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6638627	9287128	LOC_Os12g16240
Inversion	Chr12	6687704	9287132	2
Inversion	Chr1	24990101	25285120	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6638640	Chr9	12366946	LOC_Os09g20510
Translocation	Chr12	6639989	Chr9	12366943	LOC_Os09g20510
Translocation	Chr5	8428043	Chr1	23528670	LOC_Os05g14820
Translocation	Chr8	10108723	Chr6	18097956	LOC_Os08g16490

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