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| Mutant Information |
|---|
| Mutant Name | FN468-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN468-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21307269 | G-A | HET | INTRON | |
| SBS | Chr1 | 22426055 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 36215060 | T-G | HET | INTRON | |
| SBS | Chr1 | 41357014 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 42162597 | T-C | HOMO | UTR_3_PRIME | |
| SBS | Chr1 | 5011004 | C-T | HET | INTRON | |
| SBS | Chr10 | 19021951 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g35560 |
| SBS | Chr11 | 1080493 | G-A | HET | INTRON | |
| SBS | Chr12 | 7945105 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 26732734 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 6819755 | G-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 27477120 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 14240558 | G-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 2114662 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 23769530 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 25819046 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 26679063 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 32353271 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 12101187 | A-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 22020342 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 22049595 | G-A | HET | INTRON | |
| SBS | Chr6 | 8800591 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 2078344 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 24707307 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 10485726 | G-T | HET | STOP_GAINED | LOC_Os08g17130 |
| SBS | Chr8 | 9987400 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g16370 |
| SBS | Chr9 | 17812413 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 8626396 | G-A | HOMO | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 813001 | 832000 | 19000 | 3 |
| Deletion | Chr10 | 5737038 | 5737039 | 1 | |
| Deletion | Chr7 | 6228455 | 6228458 | 3 | LOC_Os07g11280 |
| Deletion | Chr8 | 8907001 | 8956000 | 49000 | 6 |
| Deletion | Chr7 | 10834505 | 10834518 | 13 | |
| Deletion | Chr5 | 11604643 | 11604654 | 11 | |
| Deletion | Chr3 | 11749255 | 11749257 | 2 | |
| Deletion | Chr8 | 17610453 | 17610454 | 1 | |
| Deletion | Chr11 | 21254560 | 21254564 | 4 | LOC_Os11g36150 |
| Deletion | Chr8 | 27294906 | 27294907 | 1 | |
| Deletion | Chr1 | 27304551 | 27304558 | 7 | |
| Deletion | Chr1 | 29801281 | 29801297 | 16 | LOC_Os01g51840 |
| Deletion | Chr1 | 30610783 | 30610784 | 1 | LOC_Os01g53280 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 31490833 | 31490835 | 3 | |
| Insertion | Chr4 | 34608835 | 34608836 | 2 | LOC_Os04g58110 |
| Insertion | Chr5 | 14713769 | 14713769 | 1 | |
| Insertion | Chr6 | 14544320 | 14544320 | 1 | |
| Insertion | Chr7 | 14662587 | 14662587 | 1 | |
| Insertion | Chr8 | 2234884 | 2234890 | 7 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 17040118 | 17118539 | LOC_Os01g31160 |
| Inversion | Chr1 | 17045637 | 17118543 | LOC_Os01g31180 |
| Inversion | Chr7 | 25127599 | 25261106 | |
| Inversion | Chr7 | 27425239 | 27571882 | |
| Inversion | Chr7 | 27426452 | 27572051 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 19843682 | Chr3 | 29848823 | LOC_Os11g33938 |
| Translocation | Chr7 | 27571885 | Chr2 | 2736837 | LOC_Os02g05620 |
| Translocation | Chr7 | 27572035 | Chr2 | 2736657 | LOC_Os02g05620 |