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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	37046745	G-T	HET
SBS	Chr1	39352484	G-T	HET
SBS	Chr1	5129653	C-T	HET
SBS	Chr10	15002051	C-T	HOMO	LOC_Os10g28750
SBS	Chr10	9846969	G-A	HET	LOC_Os10g19322
SBS	Chr11	22033946	G-A	HOMO
SBS	Chr11	22977477	G-A	HET
SBS	Chr12	16120982	T-C	HOMO
SBS	Chr12	1834684	C-T	HET
SBS	Chr12	26791295	A-C	HET
SBS	Chr12	5042792	C-T	HET
SBS	Chr2	10296113	A-G	HET
SBS	Chr2	15268002	G-C	HET
SBS	Chr2	18633150	T-C	HET
SBS	Chr2	20643781	C-T	HET	LOC_Os02g34450
SBS	Chr2	2671813	C-T	HET
SBS	Chr2	2721365	C-T	HET
SBS	Chr2	35403243	G-A	HET
SBS	Chr3	29743352	C-T	HET	LOC_Os03g51870
SBS	Chr5	29402966	G-T	HET
SBS	Chr5	29402967	A-T	HET
SBS	Chr6	15775343	C-T	HOMO
SBS	Chr6	20471240	T-A	HOMO
SBS	Chr6	3469862	A-T	HET
SBS	Chr6	3469863	G-T	HET
SBS	Chr6	3469865	G-T	HET
SBS	Chr7	13018703	T-G	HOMO
SBS	Chr8	14002347	C-T	HET
SBS	Chr8	17691499	C-T	HET
SBS	Chr8	22755793	T-A	HET	LOC_Os08g36110
SBS	Chr8	26276070	A-G	HET
SBS	Chr8	345519	C-T	HET	LOC_Os08g01580
SBS	Chr8	6484946	C-T	HET
SBS	Chr9	18120354	C-T	HET	LOC_Os09g29810
SBS	Chr9	6212725	G-A	HOMO

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1516943	1516943	1
Deletion	Chr9	1951429	1951438	10
Deletion	Chr12	4243108	4243108	1
Deletion	Chr12	5472001	5483000	11000	2
Deletion	Chr1	7495001	7525000	30000	4
Deletion	Chr1	9381100	9381100	1	LOC_Os01g16530
Deletion	Chr2	9402136	9402136	1
Deletion	Chr7	9454061	9454061	1
Deletion	Chr1	10178376	10178502	127
Deletion	Chr10	11452744	11452744	1
Deletion	Chr2	11600327	11600330	4
Deletion	Chr10	12295792	12295794	3
Deletion	Chr1	13298237	13298239	3
Deletion	Chr1	14488495	14488496	2
Deletion	Chr3	14806385	14806386	2
Deletion	Chr8	14807371	14807371	1	LOC_Os08g24520
Deletion	Chr6	15745864	15745872	9
Deletion	Chr5	15826728	15826728	1
Deletion	Chr6	17662035	17662044	10
Deletion	Chr8	18256810	18256817	8
Deletion	Chr7	18849057	18849066	10
Deletion	Chr12	21679006	21679007	2
Deletion	Chr12	21893244	21893244	1
Deletion	Chr10	22360063	22360066	4
Deletion	Chr7	23941077	23941077	1
Deletion	Chr6	27391591	27391612	22
Deletion	Chr5	27828001	27899000	71000	12
Deletion	Chr4	28571674	28571684	11
Deletion	Chr3	29380001	29473000	93000	15
Deletion	Chr5	29717001	29804000	87000	14
Deletion	Chr1	35965896	35965897	2

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15683389	15683486	98
Insertion	Chr1	8589097	8589097	1
Insertion	Chr11	13479931	13480014	84	LOC_Os11g23810
Insertion	Chr12	21379526	21379526	1
Insertion	Chr12	6023930	6023930	1
Insertion	Chr2	1351743	1351743	1
Insertion	Chr2	2526071	2526089	19
Insertion	Chr4	26501103	26501104	2
Insertion	Chr5	11815944	11815944	1
Insertion	Chr5	12204265	12204265	1
Insertion	Chr6	23584072	23584072	1
Insertion	Chr6	25246934	25246935	2
Insertion	Chr9	9990424	9990424	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5483366	5958539
Inversion	Chr11	25881739	25977116
Inversion	Chr11	25881743	25977123
Inversion	Chr4	28893008	29000431	LOC_Os04g48460
Inversion	Chr4	28893027	29000446	LOC_Os04g48460
Inversion	Chr4	29000850	29002099
Inversion	Chr4	29000860	29005900
Inversion	Chr3	29353077	29380475
Inversion	Chr3	29377811	29473254	LOC_Os03g51340

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5511011	Chr3	29376596
Translocation	Chr5	29716594	Chr3	29380485
Translocation	Chr5	29802332	Chr3	29376601	LOC_Os05g51930

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