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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1537019	C-T	HET	INTERGENIC
SBS	Chr2	2513660	T-C	HET	INTERGENIC
SBS	Chr2	17662172	A-G	HET	INTRON
SBS	Chr3	2316408	C-T	HOMO	INTERGENIC
SBS	Chr3	9863238	T-C	HOMO	INTERGENIC
SBS	Chr4	4458364	T-G	HET	UTR_3_PRIME
SBS	Chr4	9509337	T-C	HOMO	INTERGENIC
SBS	Chr4	10875685	C-A	HOMO	INTRON
SBS	Chr4	33511122	T-A	HET	INTERGENIC
SBS	Chr5	681710	C-T	HET	INTERGENIC
SBS	Chr5	12913823	C-T	HET	INTERGENIC
SBS	Chr6	8559051	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15100
SBS	Chr6	15066808	A-G	HET	INTRON
SBS	Chr7	178026	G-A	HET	INTERGENIC
SBS	Chr7	1065828	A-G	HOMO	INTERGENIC
SBS	Chr7	20621160	C-T	HET	INTERGENIC
SBS	Chr7	25218696	T-A	HOMO	INTERGENIC
SBS	Chr8	1031384	A-C	HOMO	INTERGENIC
SBS	Chr8	22283208	G-A	HOMO	INTERGENIC
SBS	Chr8	23954331	A-G	HET	INTERGENIC
SBS	Chr8	27825995	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g44200
SBS	Chr9	2182220	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	7333019	C-T	HET	UTR_3_PRIME
SBS	Chr9	12081052	T-C	HET	INTRON
SBS	Chr10	2226329	T-G	HET	INTERGENIC
SBS	Chr11	14337503	C-T	HET	INTERGENIC
SBS	Chr11	14692782	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25760
SBS	Chr11	20562606	A-T	HET	INTERGENIC
SBS	Chr11	20881669	T-G	HET	INTERGENIC
SBS	Chr12	9836139	C-T	HET	INTERGENIC
SBS	Chr12	24242495	C-T	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	724801	724803	2
Deletion	Chr12	1368168	1368169	1
Deletion	Chr10	2235203	2235211	8
Deletion	Chr4	3227818	3227819	1	LOC_Os04g06220
Deletion	Chr9	4040001	4372000	332000	43
Deletion	Chr6	6017327	6017328	1
Deletion	Chr2	8325808	8325809	1
Deletion	Chr7	9393896	9393901	5
Deletion	Chr7	9602462	9602484	22
Deletion	Chr1	10125003	10125009	6
Deletion	Chr4	11079865	11079899	34
Deletion	Chr1	11251837	11251838	1
Deletion	Chr10	14706577	14706582	5
Deletion	Chr2	14878923	14878924	1	LOC_Os02g25480
Deletion	Chr5	15601948	15601951	3
Deletion	Chr4	15904930	16007714	102784	16
Deletion	Chr7	19635550	19638945	3395
Deletion	Chr12	20867459	20867467	8
Deletion	Chr1	26044345	26044377	32	LOC_Os01g45860
Deletion	Chr11	27585166	27585168	2	LOC_Os11g45580
Deletion	Chr2	28046316	28046325	9
Deletion	Chr3	32554105	32554106	1
Deletion	Chr2	35800572	35807804	7232	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	30718755	30718756	2
Insertion	Chr8	4309379	4309411	33
Insertion	Chr3	24164437	24164437	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	131005	13121878	LOC_Os03g01200
Inversion	Chr6	7380411	12070352	LOC_Os06g13420
Inversion	Chr9	12038246	12585799	LOC_Os09g20910
Inversion	Chr1	21788968	23038166	LOC_Os01g38840
Inversion	Chr1	21788980	23038166	LOC_Os01g38840

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10948770	Chr4	2115410
Translocation	Chr12	19376796	Chr1	13934725	LOC_Os01g24764
Translocation	Chr7	19635560	Chr2	941119	LOC_Os02g02590
Translocation	Chr7	19638932	Chr2	941116	LOC_Os02g02590
Translocation	Chr8	21684697	Chr2	16775465
Translocation	Chr12	24333098	Chr3	20216175
Translocation	Chr2	35800623	Chr1	6636233	2
Translocation	Chr2	35805821	Chr1	6636233	2

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