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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18676618	A-G	HET	INTERGENIC
SBS	Chr1	21540086	A-C	HOMO	INTRON
SBS	Chr1	3993776	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	13366476	A-G	HET	INTERGENIC
SBS	Chr10	18096696	G-A	HET	INTERGENIC
SBS	Chr11	8881249	C-T	HOMO	INTERGENIC
SBS	Chr11	8881250	C-T	HOMO	INTERGENIC
SBS	Chr12	14916825	T-A	HET	INTERGENIC
SBS	Chr12	15990155	T-C	HOMO	INTERGENIC
SBS	Chr12	26586463	G-C	HET	INTERGENIC
SBS	Chr4	20648675	G-T	HET	INTERGENIC
SBS	Chr4	35494708	T-C	HOMO	INTERGENIC
SBS	Chr4	6164944	G-T	HET	INTERGENIC
SBS	Chr5	11705210	G-A	HET	INTERGENIC
SBS	Chr5	16947586	C-A	HET	INTERGENIC
SBS	Chr5	23623926	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40220
SBS	Chr6	10087059	A-C	HET	UTR_5_PRIME
SBS	Chr6	26817594	T-C	HOMO	INTERGENIC
SBS	Chr6	6900492	A-T	HET	INTRON
SBS	Chr7	14500002	C-T	HET	INTERGENIC
SBS	Chr7	21461588	T-A	HOMO	INTERGENIC
SBS	Chr8	1379615	G-A	HET	INTRON
SBS	Chr8	1379941	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03080
SBS	Chr8	7416545	A-T	HET	SYNONYMOUS_CODING
SBS	Chr9	1588484	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g03300

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	98367	98370	3
Deletion	Chr7	518468	518471	3	LOC_Os07g01860
Deletion	Chr8	1380085	1380086	1
Deletion	Chr6	3321442	3321446	4
Deletion	Chr9	3633566	3633574	8
Deletion	Chr8	5477500	5477504	4	LOC_Os08g09450
Deletion	Chr8	6433301	6433305	4	LOC_Os08g10920
Deletion	Chr7	11773274	11773275	1
Deletion	Chr12	13156573	13156575	2
Deletion	Chr8	13943227	13943230	3
Deletion	Chr6	13971523	13971535	12
Deletion	Chr3	16094282	16094297	15	LOC_Os03g28010
Deletion	Chr2	16110419	16110421	2
Deletion	Chr11	16789139	16789140	1
Deletion	Chr7	18150713	18150720	7
Deletion	Chr11	18915575	18915583	8
Deletion	Chr11	23433800	23433802	2
Deletion	Chr3	23965274	23965277	3
Deletion	Chr12	26345869	26345876	7
Deletion	Chr2	30103894	30103896	2	LOC_Os02g49250
Deletion	Chr2	32060789	32060791	2
Deletion	Chr2	33279262	33279344	82
Deletion	Chr3	35041524	35041532	8	LOC_Os03g61800
Deletion	Chr1	36855126	36855139	13	LOC_Os01g63560

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1677692	1677695	4
Insertion	Chr2	19214790	19214793	4
Insertion	Chr5	20276138	20276139	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9968323	11242096
Inversion	Chr2	9968337	11242135

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8169319	Chr3	16033710	LOC_Os03g27920
Translocation	Chr8	10108708	Chr6	18097959	LOC_Os08g16490
Translocation	Chr7	24389000	Chr1	21351850
Translocation	Chr4	31384674	Chr3	16289491	LOC_Os03g28300

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