Search Results
| Mutant Information |
|---|
| Mutant Name | FN471-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN471-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21142639 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g37790 |
| SBS | Chr1 | 21367194 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g38150 |
| SBS | Chr1 | 27268603 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 5728004 | C-A | HOMO | INTRON | |
| SBS | Chr2 | 11766547 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 35664084 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 3927228 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 21406691 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g38570 |
| SBS | Chr3 | 21406692 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g38570 |
| SBS | Chr4 | 12859990 | A-T | HET | INTRON | |
| SBS | Chr4 | 12859991 | A-T | HET | INTRON | |
| SBS | Chr4 | 14716133 | C-G | HET | INTRON | |
| SBS | Chr4 | 24953639 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 8104789 | A-T | HET | INTRON | |
| SBS | Chr5 | 8726472 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g15430 |
| SBS | Chr5 | 12900802 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 16644825 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 21265846 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 26137852 | C-T | HOMO | STOP_GAINED | LOC_Os05g44960 |
| SBS | Chr6 | 14993930 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 26240228 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 2104503 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 14056065 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g24700 |
| SBS | Chr8 | 12069912 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 12324413 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 3191245 | C-T | HET | INTRON | |
| SBS | Chr9 | 14756658 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4655320 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 21947811 | C-T | HET | INTRON | |
| SBS | Chr11 | 25775909 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr12 | 15965546 | C-G | HOMO | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1125944 | 1125964 | 20 | |
| Deletion | Chr3 | 1327497 | 1327506 | 9 | LOC_Os03g03150 |
| Deletion | Chr6 | 11534440 | 11534472 | 32 | |
| Deletion | Chr12 | 11708233 | 11708248 | 15 | |
| Deletion | Chr3 | 18283177 | 18283181 | 4 | |
| Deletion | Chr4 | 19176945 | 19176954 | 9 | LOC_Os04g32020 |
| Deletion | Chr9 | 19812166 | 19812170 | 4 | |
| Deletion | Chr9 | 20145799 | 20145827 | 28 | LOC_Os09g34120 |
| Deletion | Chr3 | 22056300 | 22056301 | 1 | LOC_Os03g39655 |
| Deletion | Chr1 | 25839277 | 25839290 | 13 | LOC_Os01g45520 |
| Deletion | Chr4 | 28206378 | 28206390 | 12 | |
| Deletion | Chr4 | 29090714 | 29090721 | 7 | LOC_Os04g48770 |
| Deletion | Chr2 | 34437977 | 34437989 | 12 | |
| Deletion | Chr3 | 35283694 | 35283695 | 1 | |
| Deletion | Chr2 | 35308778 | 35308798 | 20 | LOC_Os02g57660 |
| Deletion | Chr2 | 35381951 | 35390013 | 8062 | 2 |
| Deletion | Chr2 | 35400987 | 35400988 | 1 | LOC_Os02g57800 |
| Deletion | Chr1 | 36930096 | 36930119 | 23 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 4476825 | 4476825 | 1 | |
| Insertion | Chr8 | 13657406 | 13657407 | 2 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 14631912 | Chr2 | 34294536 | |
| Translocation | Chr7 | 14633665 | Chr2 | 34294519 | |
| Translocation | Chr6 | 27804544 | Chr3 | 25799371 | |
| Translocation | Chr6 | 29732129 | Chr2 | 35664194 |