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| Mutant Information |
|---|
| Mutant Name | FN4716-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4716-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31847070 | T-A | HOMO | ||
| SBS | Chr10 | 13072854 | G-A | HET | ||
| SBS | Chr10 | 599022 | C-G | HOMO | ||
| SBS | Chr10 | 7457217 | T-C | HET | ||
| SBS | Chr12 | 11115941 | G-A | HET | ||
| SBS | Chr12 | 19596406 | G-A | HOMO | ||
| SBS | Chr12 | 20997560 | C-T | HET | ||
| SBS | Chr12 | 24979768 | C-T | HET | ||
| SBS | Chr12 | 27263007 | A-T | HET | ||
| SBS | Chr12 | 27336071 | T-C | HET | ||
| SBS | Chr12 | 3970088 | G-A | HET | ||
| SBS | Chr12 | 5390416 | G-A | HOMO | ||
| SBS | Chr2 | 27473125 | T-A | HOMO | ||
| SBS | Chr2 | 31298242 | C-T | HOMO | ||
| SBS | Chr2 | 8224809 | G-A | HOMO | ||
| SBS | Chr3 | 16903637 | G-C | HOMO | ||
| SBS | Chr5 | 11046603 | G-T | HET | ||
| SBS | Chr6 | 14196913 | C-T | HET | LOC_Os06g24240 | |
| SBS | Chr6 | 14430873 | G-A | HET | ||
| SBS | Chr6 | 26354404 | G-A | HOMO | ||
| SBS | Chr6 | 27404535 | C-G | HOMO | ||
| SBS | Chr6 | 3303367 | A-G | HOMO | ||
| SBS | Chr6 | 5496827 | C-A | HOMO | ||
| SBS | Chr6 | 647159 | G-T | HET | LOC_Os06g02160 | |
| SBS | Chr8 | 18822109 | C-T | HET | ||
| SBS | Chr8 | 24048870 | T-C | HET | ||
| SBS | Chr9 | 22634363 | C-A | HOMO | ||
| SBS | Chr9 | 3197569 | C-T | HET |
Deletions: 33
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 141795 | 141795 | 1 | LOC_Os05g01180 |
| Deletion | Chr10 | 637001 | 665000 | 28000 | 5 |
| Deletion | Chr1 | 1530209 | 1530209 | 1 | |
| Deletion | Chr11 | 1907677 | 1907677 | 1 | |
| Deletion | Chr9 | 2843673 | 2843673 | 1 | |
| Deletion | Chr4 | 3503148 | 3503148 | 1 | |
| Deletion | Chr11 | 3760908 | 3760908 | 1 | |
| Deletion | Chr3 | 7125395 | 7125396 | 2 | LOC_Os03g13200 |
| Deletion | Chr6 | 8484997 | 8485086 | 90 | LOC_Os06g14950 |
| Deletion | Chr9 | 9934214 | 9934214 | 1 | |
| Deletion | Chr5 | 10626476 | 10626479 | 4 | |
| Deletion | Chr1 | 13371870 | 13371891 | 22 | |
| Deletion | Chr12 | 14006128 | 14006135 | 8 | |
| Deletion | Chr6 | 14499751 | 14499751 | 1 | |
| Deletion | Chr1 | 14981503 | 14981503 | 1 | |
| Deletion | Chr12 | 15853628 | 15853641 | 14 | |
| Deletion | Chr11 | 16513582 | 16513582 | 1 | |
| Deletion | Chr7 | 17475892 | 17475893 | 2 | |
| Deletion | Chr3 | 18698523 | 18698526 | 4 | |
| Deletion | Chr1 | 19750044 | 19750113 | 70 | |
| Deletion | Chr5 | 21221612 | 21221612 | 1 | |
| Deletion | Chr11 | 22068009 | 22068009 | 1 | |
| Deletion | Chr5 | 24195974 | 24195977 | 4 | |
| Deletion | Chr2 | 24574319 | 24574331 | 13 | |
| Deletion | Chr1 | 24921772 | 24921772 | 1 | |
| Deletion | Chr8 | 26678751 | 26678753 | 3 | LOC_Os08g42250 |
| Deletion | Chr6 | 26897360 | 26897360 | 1 | |
| Deletion | Chr11 | 27159005 | 27159005 | 1 | |
| Deletion | Chr5 | 27272297 | 27272299 | 3 | |
| Deletion | Chr1 | 28916812 | 28916822 | 11 | |
| Deletion | Chr4 | 31941354 | 31941355 | 2 | |
| Deletion | Chr1 | 32408021 | 32408021 | 1 | |
| Deletion | Chr2 | 33774501 | 33774510 | 10 |
Insertions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 19727452 | 19727452 | 1 | |
| Insertion | Chr10 | 12534376 | 12534445 | 70 | |
| Insertion | Chr12 | 18255869 | 18255869 | 1 | |
| Insertion | Chr12 | 18900950 | 18900950 | 1 | |
| Insertion | Chr12 | 8273472 | 8273559 | 88 | LOC_Os12g14490 |
| Insertion | Chr3 | 17335820 | 17335821 | 2 | |
| Insertion | Chr3 | 6025598 | 6025598 | 1 | |
| Insertion | Chr4 | 15552510 | 15552510 | 1 | |
| Insertion | Chr5 | 15920240 | 15920240 | 1 | |
| Insertion | Chr8 | 16304682 | 16304682 | 1 | |
| Insertion | Chr8 | 2824391 | 2824391 | 1 | LOC_Os08g05360 |
| Insertion | Chr9 | 2167226 | 2167226 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 26778674 | 26778835 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 9308741 | Chr4 | 30774517 | |
| Translocation | Chr7 | 9309008 | Chr4 | 30774516 | |
| Translocation | Chr12 | 24433157 | Chr10 | 7293486 | LOC_Os10g13490 |
| Translocation | Chr12 | 24433824 | Chr4 | 18109542 |