Search Results
| Mutant Information |
|---|
| Mutant Name | FN472-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN472-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 163335 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 10225551 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 20580573 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 42169863 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g72680 |
| SBS | Chr2 | 16222334 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 28966474 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 1725235 | G-C | HET | INTRON | |
| SBS | Chr3 | 11198722 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 17175882 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 714307 | A-G | HET | INTRON | |
| SBS | Chr5 | 22621842 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 4043616 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 14135807 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 26704689 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 11202939 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 12939021 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22960 |
| SBS | Chr9 | 3345900 | A-C | HET | UTR_5_PRIME | |
| SBS | Chr10 | 12001228 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 17830850 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g30620 |
| SBS | Chr12 | 12690033 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 21940389 | A-G | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 745833 | 745835 | 2 | |
| Deletion | Chr2 | 1023000 | 1023004 | 4 | |
| Deletion | Chr2 | 2265105 | 2265114 | 9 | |
| Deletion | Chr9 | 3492549 | 3492565 | 16 | |
| Deletion | Chr7 | 4903150 | 4903151 | 1 | |
| Deletion | Chr3 | 6689427 | 6689429 | 2 | LOC_Os03g12600 |
| Deletion | Chr7 | 6981137 | 6981162 | 25 | |
| Deletion | Chr7 | 7504001 | 7652000 | 148000 | 20 |
| Deletion | Chr3 | 10686606 | 10686616 | 10 | LOC_Os03g19080 |
| Deletion | Chr6 | 13731020 | 13731032 | 12 | |
| Deletion | Chr7 | 14879574 | 14879580 | 6 | |
| Deletion | Chr10 | 15407424 | 15407435 | 11 | |
| Deletion | Chr9 | 16038679 | 16038686 | 7 | |
| Deletion | Chr6 | 16247416 | 16247442 | 26 | |
| Deletion | Chr11 | 20120847 | 20120848 | 1 | |
| Deletion | Chr5 | 21412219 | 21412221 | 2 | |
| Deletion | Chr1 | 23613919 | 23613920 | 1 | |
| Deletion | Chr12 | 25883838 | 25884051 | 213 | |
| Deletion | Chr2 | 31073530 | 31073535 | 5 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 8453398 | 8453405 | 8 | |
| Insertion | Chr3 | 17171667 | 17171667 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 28795245 | 29157333 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 1870168 | Chr10 | 186482 | LOC_Os11g04480 |
| Translocation | Chr10 | 11338898 | Chr6 | 10850197 | 2 |
| Translocation | Chr12 | 12533798 | Chr2 | 15415533 | 2 |
| Translocation | Chr6 | 19260893 | Chr2 | 1391897 | LOC_Os02g03410 |