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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28798522	T-C	HET	INTERGENIC
SBS	Chr1	3765329	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g07840
SBS	Chr10	18941317	C-T	HOMO	UTR_3_PRIME
SBS	Chr10	20517900	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g38402
SBS	Chr10	2707367	T-C	HET	INTERGENIC
SBS	Chr10	7265668	G-A	HET	INTERGENIC
SBS	Chr11	14229278	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24990
SBS	Chr11	14229289	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24990
SBS	Chr11	16948034	A-T	HET	INTERGENIC
SBS	Chr12	13417002	C-T	HET	INTERGENIC
SBS	Chr12	13417191	G-A	HET	INTERGENIC
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	9988880	A-T	HET	INTERGENIC
SBS	Chr2	22350186	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g37010
SBS	Chr3	16340082	T-C	HOMO	INTERGENIC
SBS	Chr3	19680908	G-T	HET	INTERGENIC
SBS	Chr3	25100699	T-C	HOMO	INTERGENIC
SBS	Chr3	29786594	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g51920
SBS	Chr3	32364484	C-T	HOMO	INTERGENIC
SBS	Chr4	13778943	T-A	HET	INTRON
SBS	Chr4	22153576	A-G	HET	INTRON
SBS	Chr4	2222583	A-G	HET	INTRON
SBS	Chr4	22749953	A-C	HET	INTRON
SBS	Chr4	4400300	C-T	HET	INTERGENIC
SBS	Chr4	4400304	A-T	HET	INTERGENIC
SBS	Chr6	1035024	C-T	HET	INTERGENIC
SBS	Chr6	2617627	C-T	HET	INTRON
SBS	Chr6	6181979	C-G	HET	INTERGENIC
SBS	Chr7	19398946	A-G	HET	INTERGENIC
SBS	Chr7	24019751	G-A	HET	INTERGENIC
SBS	Chr7	249295	T-C	HOMO	INTERGENIC
SBS	Chr8	4784381	C-T	HET	INTERGENIC
SBS	Chr8	5066289	G-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2761279	2761281	2
Deletion	Chr8	4365071	4365086	15	LOC_Os08g07790
Deletion	Chr4	5165001	5227000	62000	11
Deletion	Chr2	6994226	6994241	15
Deletion	Chr4	7055430	7055456	26
Deletion	Chr5	7819865	7819866	1
Deletion	Chr6	8846271	8846272	1
Deletion	Chr2	8874622	8874623	1	LOC_Os02g15750
Deletion	Chr12	9994482	9994497	15
Deletion	Chr7	10719573	10719574	1
Deletion	Chr7	11173356	11173361	5
Deletion	Chr12	12170194	12170212	18
Deletion	Chr9	13782050	13782071	21
Deletion	Chr3	13878479	13878490	11
Deletion	Chr10	16992714	16992718	4
Deletion	Chr11	17863565	17863568	3
Deletion	Chr5	19187322	19187345	23
Deletion	Chr5	19199863	19199865	2
Deletion	Chr5	19234866	19234871	5
Deletion	Chr9	20278198	20278200	2
Deletion	Chr6	21334688	21334689	1
Deletion	Chr4	22140973	22140984	11
Deletion	Chr3	23407260	23407261	1
Deletion	Chr5	25511379	25511441	62
Deletion	Chr1	27289557	27289581	24
Deletion	Chr6	27609993	27610004	11
Deletion	Chr2	29063384	29063396	12
Deletion	Chr2	29090417	29090419	2	LOC_Os02g47605

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	14222005	14222005	1
Insertion	Chr3	25579459	25579460	2
Insertion	Chr5	28560675	28560675	1
Insertion	Chr6	29024026	29024026	1
Insertion	Chr8	13202778	13202778	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	16342925	Chr4	2769018
Translocation	Chr5	26352389	Chr1	2174255

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