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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	16833621	A-C	HET
SBS	Chr1	38963055	T-C	HET
SBS	Chr10	16571737	C-G	HET
SBS	Chr10	21323885	T-C	HET	LOC_Os10g39850
SBS	Chr11	12661155	T-A	HOMO
SBS	Chr11	12661156	C-A	HOMO
SBS	Chr11	12661157	G-T	HOMO
SBS	Chr11	12661168	G-A	HOMO
SBS	Chr11	17407124	T-A	HET	LOC_Os11g29950
SBS	Chr12	12533135	C-T	HET
SBS	Chr12	7389079	G-A	HET
SBS	Chr3	11276232	C-T	HET
SBS	Chr3	12171836	A-T	HET
SBS	Chr3	530406	A-T	HET
SBS	Chr4	13373338	G-T	HOMO
SBS	Chr4	18397186	T-A	HOMO
SBS	Chr4	28560383	T-C	HET
SBS	Chr5	10617047	A-G	HET
SBS	Chr5	25970116	G-T	HOMO
SBS	Chr5	9961036	A-G	HOMO	LOC_Os05g17360
SBS	Chr6	11175699	T-C	HET
SBS	Chr6	5723093	A-G	HET
SBS	Chr8	7259075	C-T	HOMO
SBS	Chr9	18240791	G-A	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	406755	406755	1
Deletion	Chr3	412286	412301	16
Deletion	Chr4	477699	477701	3	LOC_Os04g01720
Deletion	Chr6	3483157	3483157	1
Deletion	Chr8	3880294	3880364	71
Deletion	Chr2	3989525	3989525	1
Deletion	Chr6	5116979	5116979	1
Deletion	Chr7	7880910	7880915	6
Deletion	Chr4	9452182	9452183	2
Deletion	Chr9	9706740	9706770	31	LOC_Os09g15880
Deletion	Chr6	10593063	10593063	1
Deletion	Chr9	13219828	13219844	17
Deletion	Chr6	15528416	15528416	1
Deletion	Chr8	17046460	17046460	1
Deletion	Chr8	17251001	17479000	228000	32
Deletion	Chr2	18535001	18544000	9000	LOC_Os02g31030
Deletion	Chr7	18727733	18727734	2
Deletion	Chr10	20678383	20678383	1
Deletion	Chr10	20797306	20797306	1	LOC_Os10g39020
Deletion	Chr10	21083992	21083992	1
Deletion	Chr9	21289772	21289772	1
Deletion	Chr11	21310854	21310854	1	LOC_Os11g36220
Deletion	Chr2	22703382	22703417	36	LOC_Os02g37620
Deletion	Chr1	32136204	32136208	5
Deletion	Chr1	32298788	32298788	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29173556	29173556	1
Insertion	Chr1	40326882	40326884	3
Insertion	Chr10	11452752	11452752	1
Insertion	Chr11	23362214	23362214	1
Insertion	Chr12	22682846	22682846	1
Insertion	Chr3	18264796	18264834	39
Insertion	Chr4	10299853	10299854	2
Insertion	Chr4	18688178	18688187	10
Insertion	Chr4	25995558	25995558	1
Insertion	Chr4	33061211	33061268	58
Insertion	Chr6	19394312	19394314	3
Insertion	Chr7	3786070	3786070	1
Insertion	Chr8	11150439	11150523	85
Insertion	Chr8	17023937	17023937	1
Insertion	Chr8	24525480	24525529	50
Insertion	Chr8	2557737	2557737	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8980597	8980681
Inversion	Chr11	9206367	9229839	LOC_Os11g16640
Inversion	Chr11	9206368	9229829	LOC_Os11g16640
Inversion	Chr3	29816997	30431158	LOC_Os03g53060
Inversion	Chr3	29817007	30431166	LOC_Os03g53060

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr7	19550909	Chr3	13478835
Translocation	Chr7	19550912	Chr3	13478710
Translocation	Chr9	22691454	Chr4	17324777
Translocation	Chr12	23989609	Chr10	22736672

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