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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	12173648	T-A	HOMO
SBS	Chr1	3772580	C-T	HOMO	LOC_Os01g07840
SBS	Chr10	22425609	G-A	HOMO
SBS	Chr10	7848117	A-G	HOMO
SBS	Chr11	25517078	C-T	HET
SBS	Chr11	27189595	C-A	HET
SBS	Chr12	10173938	C-A	HOMO
SBS	Chr12	10563927	G-A	HET
SBS	Chr12	3878217	A-T	HOMO
SBS	Chr3	2257740	A-G	HOMO
SBS	Chr3	23123639	G-A	HOMO
SBS	Chr3	28043010	G-A	HET
SBS	Chr3	28827830	T-C	HET
SBS	Chr4	26046140	G-A	HET
SBS	Chr4	7335889	T-A	HET
SBS	Chr4	9439873	G-A	HET
SBS	Chr5	13261401	G-A	HET	LOC_Os05g23240
SBS	Chr5	13745340	T-A	HET
SBS	Chr5	4528015	T-A	HET	LOC_Os05g08290
SBS	Chr5	6764252	C-T	HET
SBS	Chr5	9094846	C-G	HET
SBS	Chr6	6264957	C-T	HOMO
SBS	Chr7	14992837	T-G	HET
SBS	Chr7	5723895	G-A	HOMO
SBS	Chr8	12324413	C-T	HOMO
SBS	Chr9	9809475	G-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	715760	715760	1
Deletion	Chr8	1845467	1845467	1
Deletion	Chr9	2979724	2979728	5
Deletion	Chr12	6620002	6620002	1
Deletion	Chr2	6629956	6629959	4
Deletion	Chr7	8624034	8624034	1
Deletion	Chr11	9924718	9924718	1
Deletion	Chr5	11122531	11122532	2
Deletion	Chr1	12805964	12805980	17
Deletion	Chr9	16144762	16144767	6
Deletion	Chr11	17102843	17102856	14
Deletion	Chr11	19287604	19287605	2
Deletion	Chr11	26738413	26738413	1
Deletion	Chr11	27148874	27148879	6
Deletion	Chr8	28126077	28126077	1	LOC_Os08g44760
Deletion	Chr4	28417041	28417041	1
Deletion	Chr1	34081835	34081841	7
Deletion	Chr3	34955342	34955342	1
Deletion	Chr1	36129314	36129315	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	3801991	3801992	2
Insertion	Chr10	6049225	6049226	2
Insertion	Chr10	7651790	7651790	1
Insertion	Chr11	11105946	11105946	1
Insertion	Chr11	21560070	21560070	1
Insertion	Chr11	5372649	5372654	6
Insertion	Chr12	23586407	23586476	70
Insertion	Chr2	5175893	5175893	1
Insertion	Chr3	19779367	19779427	61
Insertion	Chr3	9193929	9193929	1
Insertion	Chr4	25821022	25821022	1
Insertion	Chr4	34692836	34692837	2
Insertion	Chr6	8656151	8656168	18
Insertion	Chr7	1340872	1340872	1
Insertion	Chr7	16440915	16440915	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2369706	2370056	LOC_Os08g04750
Inversion	Chr4	7273157	7501415
Inversion	Chr4	7273167	7501416
Inversion	Chr3	30738717	30738931

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	7769656	Chr1	42122292
Translocation	Chr12	9970043	Chr6	1455924
Translocation	Chr12	9970813	Chr6	1455924

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