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Mutant Information

Mutant Name	FN4752-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4752-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11469748	C-T	HET	INTERGENIC
SBS	Chr1	14535461	G-T	HET	INTERGENIC
SBS	Chr1	42469810	G-C	HET	INTERGENIC
SBS	Chr11	11087720	C-T	HET	INTERGENIC
SBS	Chr11	24871543	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	25268784	C-A	HET	INTERGENIC
SBS	Chr12	14317427	G-T	HOMO	INTERGENIC
SBS	Chr12	2000252	G-A	HET	INTERGENIC
SBS	Chr12	25762110	T-C	HET	INTERGENIC
SBS	Chr12	8600992	C-G	HET	INTRON
SBS	Chr12	9864108	C-A	HET	INTERGENIC
SBS	Chr2	3439387	A-G	HET	INTERGENIC
SBS	Chr2	35105666	C-A	HET	INTERGENIC
SBS	Chr2	8249448	C-A	HET	INTERGENIC
SBS	Chr3	1373090	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	18858162	T-G	HET	INTERGENIC
SBS	Chr3	25577455	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	35408195	C-G	HET	SYNONYMOUS_CODING
SBS	Chr3	35408197	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62530
SBS	Chr3	9586779	C-T	HET	INTERGENIC
SBS	Chr5	15902665	G-A	HET	INTERGENIC
SBS	Chr5	16607199	A-T	HET	INTERGENIC
SBS	Chr5	22727572	A-C	HET	INTRON
SBS	Chr5	23359971	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	23936365	C-T	HET	INTRON
SBS	Chr5	24084797	C-A	HET	SPLICE_SITE_REGION
SBS	Chr5	6382614	T-A	HET	INTERGENIC
SBS	Chr5	8000642	T-A	HET	UTR_5_PRIME
SBS	Chr6	12569033	C-A	HOMO	INTERGENIC
SBS	Chr6	28364582	G-A	HOMO	INTRON
SBS	Chr6	30792945	T-A	HOMO	INTERGENIC
SBS	Chr6	3905306	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g08070
SBS	Chr6	3905307	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	4006809	A-T	HET	INTERGENIC
SBS	Chr7	4419218	G-A	HET	INTERGENIC
SBS	Chr7	4902370	T-C	HET	INTERGENIC
SBS	Chr7	7907112	A-T	HET	INTERGENIC
SBS	Chr8	15263070	G-A	HET	INTRON
SBS	Chr8	19403044	G-C	HOMO	INTERGENIC
SBS	Chr8	2316747	C-T	HOMO	INTERGENIC
SBS	Chr8	23560918	C-G	HET	INTERGENIC
SBS	Chr8	26025794	C-T	HOMO	INTRON
SBS	Chr9	14013217	G-A	HET	INTERGENIC
SBS	Chr9	8962253	G-T	HET	INTERGENIC
SBS	Chr9	9742124	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15940
SBS	Chr9	9854998	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	449284	449285	1
Deletion	Chr9	945960	945961	1
Deletion	Chr9	968818	968823	5
Deletion	Chr2	1707339	1707341	2
Deletion	Chr4	2621797	2621799	2
Deletion	Chr10	5355210	5355211	1
Deletion	Chr9	5425176	5425220	44
Deletion	Chr7	7926786	7926787	1
Deletion	Chr9	9132033	9132111	78
Deletion	Chr10	9497779	9497780	1
Deletion	Chr3	11654230	11654239	9
Deletion	Chr5	14482993	14482994	1
Deletion	Chr7	15072965	15072966	1
Deletion	Chr4	15938609	15938612	3
Deletion	Chr4	17481747	17481753	6
Deletion	Chr10	17562449	17562450	1
Deletion	Chr10	19648219	19648220	1
Deletion	Chr6	20801571	20801572	1
Deletion	Chr10	20843824	20843831	7
Deletion	Chr4	21486830	21486836	6	LOC_Os04g35330
Deletion	Chr8	22070538	22070540	2
Deletion	Chr12	24546733	24546736	3

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27711602	27711654	53
Insertion	Chr1	32519431	32519431	1
Insertion	Chr11	23375812	23375814	3
Insertion	Chr11	27725711	27725754	44	LOC_Os11g45820
Insertion	Chr2	2106504	2106505	2
Insertion	Chr2	6373295	6373295	1
Insertion	Chr3	13200871	13200871	1
Insertion	Chr3	61102	61103	2
Insertion	Chr4	12901740	12901782	43
Insertion	Chr4	16136278	16136278	1
Insertion	Chr4	17193021	17193021	1
Insertion	Chr4	21404855	21404855	1
Insertion	Chr4	31709213	31709214	2
Insertion	Chr5	19288873	19288873	1
Insertion	Chr5	23890190	23890190	1
Insertion	Chr5	27453926	27453926	1
Insertion	Chr8	13805227	13805227	1
Insertion	Chr8	5207523	5207524	2
Insertion	Chr9	2960970	2960971	2
Insertion	Chr9	8280003	8280003	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23345160	23345244	LOC_Os07g38930

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr5	14541374	Chr2	25966150
Translocation	Chr11	17693016	Chr2	5950580
Translocation	Chr6	25881613	Chr2	10193788

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