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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29065522	C-T	HET	INTERGENIC
SBS	Chr1	40163508	G-A	HET	INTERGENIC
SBS	Chr10	13890407	T-A	HOMO	INTERGENIC
SBS	Chr10	1671034	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	16887120	C-G	HET	INTERGENIC
SBS	Chr10	5619500	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g10214
SBS	Chr10	9301158	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18294
SBS	Chr10	9450328	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18630
SBS	Chr10	993871	C-T	HOMO	INTRON
SBS	Chr11	16976292	C-T	HET	INTERGENIC
SBS	Chr11	17308906	T-A	HET	INTERGENIC
SBS	Chr12	14061137	G-C	HOMO	INTERGENIC
SBS	Chr12	21720614	C-A	HOMO	INTERGENIC
SBS	Chr2	32063255	G-T	HOMO	INTRON
SBS	Chr3	14007032	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	29024780	T-C	HET	INTERGENIC
SBS	Chr3	6703116	T-C	HET	INTRON
SBS	Chr3	6703117	A-T	HET	INTRON
SBS	Chr3	9863238	T-C	HOMO	INTERGENIC
SBS	Chr4	18479586	T-C	HET	INTERGENIC
SBS	Chr6	10972061	T-A	HET	INTRON
SBS	Chr6	11571504	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20170
SBS	Chr6	15066808	A-G	HET	INTRON
SBS	Chr6	2156930	T-C	HET	INTERGENIC
SBS	Chr6	29080753	A-T	HET	INTERGENIC
SBS	Chr6	8379397	T-A	HOMO	INTERGENIC
SBS	Chr7	1065828	A-G	HOMO	INTERGENIC
SBS	Chr7	6179473	G-A	HET	STOP_GAINED	LOC_Os07g11220
SBS	Chr8	7933572	C-A	HET	INTERGENIC
SBS	Chr9	22604201	A-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	372147	372152	5
Deletion	Chr6	2306696	2306702	6
Deletion	Chr8	5430241	5430245	4
Deletion	Chr5	5586155	5586160	5
Deletion	Chr7	6778439	6778440	1
Deletion	Chr10	7191845	7191847	2
Deletion	Chr12	8327936	8327939	3	LOC_Os12g14580
Deletion	Chr8	10226806	10226821	15
Deletion	Chr6	11300462	11300473	11
Deletion	Chr4	12863556	12863578	22	LOC_Os04g22690
Deletion	Chr6	13304202	13304238	36
Deletion	Chr1	13450253	13450255	2	LOC_Os01g23900
Deletion	Chr7	15991825	15991826	1
Deletion	Chr4	16167963	16167973	10	LOC_Os04g27350
Deletion	Chr7	18190278	18190280	2	LOC_Os07g30730
Deletion	Chr3	20243492	20243494	2	LOC_Os03g36530
Deletion	Chr6	20458847	20458853	6
Deletion	Chr4	22542697	22542698	1
Deletion	Chr2	24700043	24700046	3
Deletion	Chr7	25737134	25737141	7
Deletion	Chr5	28839031	28839037	6	LOC_Os05g50330
Deletion	Chr5	29749208	29749217	9
Deletion	Chr1	31267810	31267824	14
Deletion	Chr1	34381430	34381437	7	LOC_Os01g59440
Deletion	Chr1	37724001	37835000	111000	19

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21109752	21109752	1
Insertion	Chr2	8864469	8864472	4
Insertion	Chr3	12114390	12114391	2
Insertion	Chr5	28034317	28034317	1
Insertion	Chr6	28133805	28133806	2	LOC_Os06g46366
Insertion	Chr6	3999411	3999412	2
Insertion	Chr7	12674433	12674434	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16935183	17381268	LOC_Os10g32260

No Translocation

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