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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36563998	C-T	HOMO	INTERGENIC
SBS	Chr1	9367449	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16500
SBS	Chr10	21539628	T-A	HOMO	INTRON
SBS	Chr11	18836809	G-A	HET	INTERGENIC
SBS	Chr11	28438630	A-G	HET	INTERGENIC
SBS	Chr11	3053146	T-G	HET	INTERGENIC
SBS	Chr11	3101777	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06420
SBS	Chr12	19310267	A-T	HET	INTERGENIC
SBS	Chr12	19844714	C-A	HET	INTERGENIC
SBS	Chr12	27507926	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g44360
SBS	Chr2	5585471	A-G	HET	INTRON
SBS	Chr3	19113806	T-A	HOMO	INTERGENIC
SBS	Chr3	24468495	C-T	HOMO	INTRON
SBS	Chr3	26499085	T-A	HOMO	INTRON
SBS	Chr3	31643138	G-C	HET	INTERGENIC
SBS	Chr4	26775273	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	13593277	G-A	HET	INTRON
SBS	Chr5	8992398	C-G	HET	UTR_3_PRIME
SBS	Chr6	22955930	C-T	HOMO	INTERGENIC
SBS	Chr7	12400244	G-A	HOMO	INTERGENIC
SBS	Chr7	15954717	C-G	HOMO	INTERGENIC
SBS	Chr7	25695020	T-C	HOMO	INTERGENIC
SBS	Chr7	6235592	C-A	HOMO	INTRON
SBS	Chr8	24156483	T-C	HET	INTERGENIC
SBS	Chr8	3882704	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	7476249	A-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os08g12640
SBS	Chr9	21638443	C-G	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1749413	1749423	10
Deletion	Chr4	2134231	2134232	1
Deletion	Chr2	2596590	2596591	1
Deletion	Chr6	4624001	4644000	20000	5
Deletion	Chr7	5144804	5144805	1
Deletion	Chr11	6117000	6117001	1
Deletion	Chr2	6599001	6607000	8000	LOC_Os02g12650
Deletion	Chr2	14918660	14918661	1
Deletion	Chr4	15422407	15422410	3
Deletion	Chr6	16602412	16602418	6
Deletion	Chr8	17352403	17352404	1
Deletion	Chr12	20270063	20270080	17
Deletion	Chr10	20902201	20902202	1
Deletion	Chr7	23941078	23941079	1
Deletion	Chr7	25392403	25392417	14
Deletion	Chr4	25392995	25392997	2
Deletion	Chr4	26281211	26281212	1
Deletion	Chr6	27058259	27058261	2
Deletion	Chr4	27736704	27736717	13	LOC_Os04g46790
Deletion	Chr4	28067671	28067684	13	LOC_Os04g47270
Deletion	Chr5	29839264	29839265	1
Deletion	Chr4	33904781	33904788	7	LOC_Os04g56880
Deletion	Chr2	34318710	34318711	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36513592	36513592	1
Insertion	Chr11	22997587	22997587	1
Insertion	Chr11	27751458	27751459	2
Insertion	Chr2	23616900	23616900	1
Insertion	Chr2	34283517	34283517	1
Insertion	Chr3	15834295	15834295	1
Insertion	Chr4	15493049	15493049	1
Insertion	Chr4	3400735	3400735	1
Insertion	Chr4	8051948	8051948	1
Insertion	Chr5	17611700	17611700	1	LOC_Os05g30380
Insertion	Chr6	12174185	12174185	1
Insertion	Chr7	17648954	17648954	1
Insertion	Chr7	19803400	19803400	1
Insertion	Chr8	17507805	17507847	43

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6255083	6425931	LOC_Os02g12040
Inversion	Chr2	6255110	6735288	LOC_Os02g12040
Inversion	Chr3	34513994	35193979
Inversion	Chr3	35501957	35502101

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	24586937	Chr1	2640512
Translocation	Chr6	29069208	Chr3	7942860	LOC_Os03g50880
Translocation	Chr6	29069220	Chr3	7954106
Translocation	Chr6	30868255	Chr2	6599221
Translocation	Chr6	30868262	Chr3	2664632	LOC_Os03g53820

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