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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19603677	T-C	HET	INTRON
SBS	Chr1	23045142	C-T	HOMO	INTERGENIC
SBS	Chr1	31482026	A-T	HET	INTRON
SBS	Chr1	31590909	C-T	HET	INTERGENIC
SBS	Chr10	18124939	C-T	HET	INTERGENIC
SBS	Chr11	13129420	C-T	HET	INTERGENIC
SBS	Chr11	26686664	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	6077923	A-G	HET	INTERGENIC
SBS	Chr12	13001124	G-A	HET	INTRON
SBS	Chr12	13956467	T-G	HET	INTERGENIC
SBS	Chr12	19516787	C-T	HET	INTRON
SBS	Chr2	14026192	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g24210
SBS	Chr4	26811145	G-A	HOMO	INTERGENIC
SBS	Chr4	2770988	G-A	HET	INTERGENIC
SBS	Chr4	9215283	G-C	HET	SYNONYMOUS_CODING
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27200736	T-C	HOMO	INTERGENIC
SBS	Chr7	15421798	G-A	HOMO	UTR_3_PRIME
SBS	Chr7	9303724	G-A	HET	INTERGENIC
SBS	Chr8	16306030	G-A	HET	INTERGENIC
SBS	Chr8	2322927	G-A	HET	UTR_3_PRIME

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	542571	542577	6
Deletion	Chr3	1620863	1620877	14
Deletion	Chr10	3281239	3281241	2	LOC_Os10g06380
Deletion	Chr12	4803044	4803051	7
Deletion	Chr4	7209699	7209700	1
Deletion	Chr6	9817759	9817760	1
Deletion	Chr3	10860075	10860080	5
Deletion	Chr2	10981412	10981417	5
Deletion	Chr3	11987782	11987809	27
Deletion	Chr9	13354920	13354923	3
Deletion	Chr11	15900462	15900465	3
Deletion	Chr1	19600433	19600440	7
Deletion	Chr1	20432643	20432653	10	LOC_Os01g36780
Deletion	Chr4	20450006	20450098	92	LOC_Os04g33770
Deletion	Chr11	20542180	20542182	2
Deletion	Chr10	21325243	21325245	2
Deletion	Chr6	23161964	23161971	7
Deletion	Chr6	28035854	28035858	4
Deletion	Chr2	28432636	28432653	17
Deletion	Chr4	33430955	33430956	1
Deletion	Chr3	35032123	35032125	2
Deletion	Chr1	40270205	40270215	10

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2329880	2329881	2
Insertion	Chr4	32942702	32942702	1
Insertion	Chr5	6514541	6514541	1
Insertion	Chr7	17244955	17244966	12	LOC_Os07g29360
Insertion	Chr7	6098389	6098389	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11171480	11820825	LOC_Os04g20054
Inversion	Chr9	13927354	13945188	LOC_Os09g23460

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3903055	Chr9	21454316
Translocation	Chr9	8091635	Chr6	28476458	LOC_Os06g46940
Translocation	Chr12	13397036	Chr9	16355279
Translocation	Chr11	16997654	Chr2	474819
Translocation	Chr9	18489100	Chr1	35945783	LOC_Os01g62100

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