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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1039257	A-G	HET	INTERGENIC
SBS	Chr1	31259890	C-A	HET	INTERGENIC
SBS	Chr1	41338091	G-T	HET	INTERGENIC
SBS	Chr3	168874	A-C	HET	INTRON
SBS	Chr3	323370	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	1019210	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g02710
SBS	Chr3	3670201	C-T	HET	INTERGENIC
SBS	Chr3	13940743	G-A	HET	INTERGENIC
SBS	Chr3	14449391	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25310
SBS	Chr3	33127137	C-A	HET	INTERGENIC
SBS	Chr4	1366436	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03220
SBS	Chr4	12555795	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22160
SBS	Chr4	13659817	T-C	HOMO	INTERGENIC
SBS	Chr4	21543212	A-G	HET	UTR_5_PRIME
SBS	Chr4	26766344	T-G	HET	UTR_5_PRIME
SBS	Chr5	6519464	T-A	HET	INTERGENIC
SBS	Chr5	14085214	C-T	HOMO	INTERGENIC
SBS	Chr6	10648856	C-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	13113354	G-A	HET	INTERGENIC
SBS	Chr7	9512881	T-C	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	21147568	C-A	HET	INTRON
SBS	Chr8	19293992	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31200
SBS	Chr8	28332629	G-A	HET	INTERGENIC
SBS	Chr9	13068667	C-G	HET	INTERGENIC
SBS	Chr10	6625440	C-T	HET	INTRON
SBS	Chr10	13996317	C-T	HET	INTERGENIC
SBS	Chr10	17877408	C-T	HET	INTRON
SBS	Chr11	937170	A-T	HOMO	INTERGENIC
SBS	Chr11	11448945	C-G	HET	INTERGENIC
SBS	Chr11	11905535	C-T	HET	INTERGENIC
SBS	Chr11	27115684	G-A	HOMO	INTERGENIC
SBS	Chr12	1192928	C-G	HET	INTRON
SBS	Chr12	17360605	G-A	HOMO	INTERGENIC
SBS	Chr12	22225510	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	614855	614856	1
Deletion	Chr11	1511595	1511606	11	LOC_Os11g03820
Deletion	Chr9	3568031	3568033	2
Deletion	Chr8	3587397	3587398	1
Deletion	Chr8	3833251	3833252	1
Deletion	Chr7	7823447	7823448	1
Deletion	Chr6	7932427	7932432	5
Deletion	Chr3	13905970	13906194	224	LOC_Os03g24410
Deletion	Chr8	15361253	15361279	26
Deletion	Chr1	18975009	18975010	1	LOC_Os01g34410
Deletion	Chr3	19201729	19201730	1
Deletion	Chr3	21477220	21477226	6
Deletion	Chr12	22348096	22348097	1
Deletion	Chr5	23535219	23535222	3
Deletion	Chr5	25105309	25105310	1
Deletion	Chr6	27585176	27585178	2	LOC_Os06g45560
Deletion	Chr3	27909791	27909798	7	LOC_Os03g49000
Deletion	Chr6	28290243	28290245	2	LOC_Os06g46600
Deletion	Chr1	31825239	31825240	1
Deletion	Chr1	35327785	35327786	1

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	30035684	30645719	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	10628786	Chr6	17675200	LOC_Os12g18374
Translocation	Chr8	14222682	Chr6	14069873
Translocation	Chr4	25399291	Chr3	3957698	LOC_Os04g42930
Translocation	Chr8	25425831	Chr2	6996484
Translocation	Chr12	27088391	Chr3	123464	LOC_Os03g01190
Translocation	Chr12	27088392	Chr3	123467	LOC_Os03g01190

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