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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3541615	G-T	HET	INTERGENIC
SBS	Chr2	929462	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g02560
SBS	Chr2	7173494	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	12888090	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g21685
SBS	Chr2	28285075	A-G	HET	INTERGENIC
SBS	Chr2	33259979	T-A	HET	INTRON
SBS	Chr3	17283786	G-A	HOMO	INTERGENIC
SBS	Chr3	25220147	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	6569790	G-T	HET	INTERGENIC
SBS	Chr4	14826982	A-T	HET	INTERGENIC
SBS	Chr4	25585576	G-T	HET	INTERGENIC
SBS	Chr4	28532246	G-T	HOMO	INTERGENIC
SBS	Chr4	28532247	C-T	HOMO	INTERGENIC
SBS	Chr4	34499168	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	6398327	C-T	HET	INTERGENIC
SBS	Chr5	12931667	T-A	HET	INTERGENIC
SBS	Chr6	216269	T-C	HET	INTRON
SBS	Chr6	1993722	A-G	HET	UTR_3_PRIME
SBS	Chr6	6608276	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g12280
SBS	Chr6	10891808	A-T	HOMO	INTERGENIC
SBS	Chr6	14205447	G-C	HOMO	INTRON
SBS	Chr7	14221291	C-T	HOMO	INTERGENIC
SBS	Chr8	3492069	T-A	HET	INTERGENIC
SBS	Chr8	12011622	C-A	HOMO	INTERGENIC
SBS	Chr8	21959463	G-T	HET	INTERGENIC
SBS	Chr9	3394321	T-C	HOMO	INTRON
SBS	Chr9	6503708	C-A	HOMO	INTRON
SBS	Chr9	8411306	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14220
SBS	Chr10	9009080	C-T	HOMO	INTRON
SBS	Chr11	6010757	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	10813695	G-A	HET	INTERGENIC
SBS	Chr11	13336765	C-T	HOMO	INTRON
SBS	Chr11	25315051	C-T	HET	INTERGENIC
SBS	Chr12	14970991	G-A	HOMO	INTERGENIC
SBS	Chr12	26264182	C-A	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1471213	1471222	9
Deletion	Chr3	1505115	1510665	5550	2
Deletion	Chr3	1510660	2364780	854120	133
Deletion	Chr8	3458357	3458361	4
Deletion	Chr1	3541620	3541629	9
Deletion	Chr9	4286633	4286643	10
Deletion	Chr3	6064674	6064677	3
Deletion	Chr6	6690341	6690354	13
Deletion	Chr3	7224432	7224460	28
Deletion	Chr9	9148537	9148538	1	LOC_Os09g15090
Deletion	Chr1	11167944	11167961	17	LOC_Os01g19694
Deletion	Chr5	16105756	16105765	9
Deletion	Chr3	17061617	17061621	4	LOC_Os03g29940
Deletion	Chr7	21115563	21115564	1
Deletion	Chr7	22145377	22145378	1
Deletion	Chr11	23440724	23440740	16
Deletion	Chr11	23453678	23453696	18
Deletion	Chr11	24437724	24437760	36	LOC_Os11g40840
Deletion	Chr1	25040003	25040004	1	LOC_Os01g43690
Deletion	Chr11	25821547	25821556	9
Deletion	Chr11	27791092	27791099	7
Deletion	Chr1	28649096	28649128	32
Deletion	Chr7	29327666	29327669	3
Deletion	Chr1	29943191	29943193	2
Deletion	Chr4	33676535	33676538	3	2
Deletion	Chr3	35236469	35236470	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	20887034	20887035	2
Insertion	Chr8	2994270	2994271	2
Insertion	Chr3	8254837	8254838	2
Insertion	Chr5	12101959	12101959	1	LOC_Os05g20620

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5254935	5484070

No Translocation

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