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Mutant Information |
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Mutant Name | FN482-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN482-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 6567405 | A-T | HET | INTRON | |
SBS | Chr1 | 10633372 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 16440514 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 23143617 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 29907667 | T-C | HOMO | INTERGENIC | |
SBS | Chr2 | 16956566 | G-T | HET | INTERGENIC | |
SBS | Chr2 | 18458837 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 21451208 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g35690 |
SBS | Chr3 | 12783890 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g22300 |
SBS | Chr3 | 25180780 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 25218515 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 2910490 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 2916671 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g05710 |
SBS | Chr4 | 7599637 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 12228513 | A-G | HET | INTRON | |
SBS | Chr5 | 2341022 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 15567300 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 21873242 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 27304442 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 27304443 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 20607633 | T-G | HET | INTERGENIC | |
SBS | Chr7 | 22732858 | A-C | HET | INTERGENIC | |
SBS | Chr8 | 17598255 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr8 | 28247521 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 21843999 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 10378174 | G-A | HOMO | INTERGENIC | |
SBS | Chr11 | 15434494 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 14103085 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 17453188 | G-T | HET | INTERGENIC | |
SBS | Chr12 | 24907184 | C-T | HOMO | SYNONYMOUS_CODING |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 517451 | 517458 | 7 | |
Deletion | Chr4 | 2157114 | 2157129 | 15 | |
Deletion | Chr1 | 6536535 | 6536538 | 3 | |
Deletion | Chr2 | 8724960 | 8724969 | 9 | |
Deletion | Chr11 | 9823599 | 9823610 | 11 | |
Deletion | Chr1 | 12238188 | 12238190 | 2 | |
Deletion | Chr1 | 13159313 | 13159319 | 6 | LOC_Os01g23420 |
Deletion | Chr3 | 15687342 | 15687343 | 1 | |
Deletion | Chr1 | 16440519 | 16440531 | 12 | LOC_Os01g29340 |
Deletion | Chr4 | 18884989 | 18884990 | 1 | |
Deletion | Chr8 | 20985968 | 20985976 | 8 | |
Deletion | Chr2 | 21308694 | 21308695 | 1 | |
Deletion | Chr3 | 22379485 | 22379501 | 16 | LOC_Os03g40260 |
Deletion | Chr1 | 25381841 | 25381842 | 1 | |
Deletion | Chr2 | 25617059 | 25617060 | 1 | |
Deletion | Chr4 | 25730017 | 25730034 | 17 | |
Deletion | Chr4 | 25890972 | 25890994 | 22 | |
Deletion | Chr3 | 26944585 | 26944595 | 10 | |
Deletion | Chr4 | 28036994 | 28036999 | 5 | |
Deletion | Chr3 | 28779173 | 28779189 | 16 | |
Deletion | Chr4 | 30257572 | 30257577 | 5 | LOC_Os04g51090 |
Deletion | Chr4 | 32930354 | 32930355 | 1 |
Insertions: 5
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 3797349 | 24903616 | LOC_Os03g44300 |
Inversion | Chr6 | 24686099 | 25609540 | LOC_Os06g41250 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 3234375 | Chr1 | 23346976 | |
Translocation | Chr11 | 22938433 | Chr6 | 1671809 | |
Translocation | Chr8 | 27052627 | Chr3 | 3797335 | LOC_Os08g42740 |
Translocation | Chr8 | 27052639 | Chr3 | 24916396 | LOC_Os08g42740 |