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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10633372	G-C	HET	INTERGENIC
SBS	Chr1	16440514	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	23143617	G-A	HET	INTERGENIC
SBS	Chr1	29907667	T-C	HOMO	INTERGENIC
SBS	Chr1	6567405	A-T	HET	INTRON
SBS	Chr10	21843999	C-A	HET	INTERGENIC
SBS	Chr11	10378174	G-A	HOMO	INTERGENIC
SBS	Chr11	15434494	T-C	HET	INTERGENIC
SBS	Chr12	14103085	G-A	HET	INTERGENIC
SBS	Chr12	17453188	G-T	HET	INTERGENIC
SBS	Chr12	24907184	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	16956566	G-T	HET	INTERGENIC
SBS	Chr2	18458837	C-T	HET	INTERGENIC
SBS	Chr2	21451208	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g35690
SBS	Chr3	12783890	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g22300
SBS	Chr3	25180780	C-T	HOMO	INTERGENIC
SBS	Chr3	25218515	A-T	HOMO	INTERGENIC
SBS	Chr4	12228513	A-G	HET	INTRON
SBS	Chr4	2910490	C-T	HOMO	INTERGENIC
SBS	Chr4	2916671	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05710
SBS	Chr4	7599637	T-A	HET	INTERGENIC
SBS	Chr5	2341022	G-T	HET	INTERGENIC
SBS	Chr6	15567300	T-A	HET	INTERGENIC
SBS	Chr6	21873242	C-T	HET	INTERGENIC
SBS	Chr6	27304442	G-A	HET	INTERGENIC
SBS	Chr6	27304443	T-A	HET	INTERGENIC
SBS	Chr7	20607633	T-G	HET	INTERGENIC
SBS	Chr7	22732858	A-C	HET	INTERGENIC
SBS	Chr8	17598255	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	28247521	G-A	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	517451	517458	7
Deletion	Chr4	2157114	2157129	15
Deletion	Chr1	6536535	6536538	3
Deletion	Chr2	8724960	8724969	9
Deletion	Chr11	9823599	9823610	11
Deletion	Chr1	12238188	12238190	2
Deletion	Chr1	13159313	13159319	6	LOC_Os01g23420
Deletion	Chr3	15687342	15687343	1
Deletion	Chr1	16440519	16440531	12	LOC_Os01g29340
Deletion	Chr4	18884989	18884990	1
Deletion	Chr8	20985968	20985976	8
Deletion	Chr2	21308694	21308695	1
Deletion	Chr3	22379485	22379501	16	LOC_Os03g40260
Deletion	Chr1	25381841	25381842	1
Deletion	Chr2	25617059	25617060	1
Deletion	Chr4	25730017	25730034	17
Deletion	Chr4	25890972	25890994	22
Deletion	Chr3	26944585	26944595	10
Deletion	Chr4	28036994	28036999	5
Deletion	Chr3	28779173	28779189	16
Deletion	Chr4	30257572	30257577	5	LOC_Os04g51090
Deletion	Chr4	32930354	32930355	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11052183	11052184	2
Insertion	Chr1	2580941	2580944	4
Insertion	Chr11	20897219	20897219	1
Insertion	Chr2	73997	73997	1
Insertion	Chr5	5462294	5462295	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3797349	24903616	LOC_Os03g44300
Inversion	Chr6	24686099	25609540	LOC_Os06g41250

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3234375	Chr1	23346976
Translocation	Chr11	22938433	Chr6	1671809
Translocation	Chr8	27052627	Chr3	3797335	LOC_Os08g42740
Translocation	Chr8	27052639	Chr3	24916396	LOC_Os08g42740

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