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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16444546	C-T	HET	INTERGENIC
SBS	Chr1	27964519	C-T	HET	INTRON
SBS	Chr1	28363305	G-A	HET	INTERGENIC
SBS	Chr1	30459127	G-A	HOMO	INTERGENIC
SBS	Chr1	42649473	C-T	HET	INTRON
SBS	Chr10	10354841	A-G	HOMO	INTERGENIC
SBS	Chr10	144661	T-A	HET	INTERGENIC
SBS	Chr10	19751462	A-C	HET	INTERGENIC
SBS	Chr10	4743175	C-T	HOMO	INTERGENIC
SBS	Chr10	7575207	A-T	HOMO	INTRON
SBS	Chr10	8690121	C-T	HET	INTERGENIC
SBS	Chr10	9017351	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17820
SBS	Chr12	23138528	A-C	HET	INTERGENIC
SBS	Chr12	26839060	A-T	HOMO	INTERGENIC
SBS	Chr12	767351	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g02370
SBS	Chr2	16513223	C-G	HET	INTERGENIC
SBS	Chr2	2647442	T-G	HET	INTERGENIC
SBS	Chr2	35897320	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58760
SBS	Chr3	10846547	A-T	HET	SYNONYMOUS_CODING
SBS	Chr3	8588400	A-T	HET	INTRON
SBS	Chr4	193677	A-T	HET	INTRON
SBS	Chr4	23297364	A-T	HOMO	INTRON
SBS	Chr4	25617926	C-G	HET	INTERGENIC
SBS	Chr4	27036883	C-A	HET	INTRON
SBS	Chr4	5376548	C-T	HET	INTERGENIC
SBS	Chr5	18586593	G-A	HOMO	INTERGENIC
SBS	Chr5	5840305	G-A	HET	INTERGENIC
SBS	Chr5	5840306	G-A	HET	INTERGENIC
SBS	Chr5	7893962	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14130
SBS	Chr5	8703602	T-A	HET	INTRON
SBS	Chr5	8703609	G-A	HET	INTRON
SBS	Chr7	17779697	T-A	HET	UTR_3_PRIME
SBS	Chr7	23979217	A-G	HOMO	INTERGENIC
SBS	Chr7	28751856	T-G	HET	INTERGENIC
SBS	Chr8	16562924	C-A	HOMO	INTERGENIC
SBS	Chr8	26125408	T-C	HET	INTERGENIC
SBS	Chr8	27560556	T-G	HET	INTERGENIC
SBS	Chr8	8226718	T-C	HET	INTERGENIC
SBS	Chr8	8832103	G-T	HET	INTERGENIC
SBS	Chr9	22762947	C-A	HET	UTR_5_PRIME
SBS	Chr9	3025246	A-G	HET	INTERGENIC
SBS	Chr9	6735634	G-C	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	351665	351667	2
Deletion	Chr4	361261	361270	9
Deletion	Chr1	1657970	1657978	8	LOC_Os01g03890
Deletion	Chr6	4050534	4050539	5
Deletion	Chr5	4249643	4249646	3
Deletion	Chr4	5381001	5389000	8000	3
Deletion	Chr5	5664001	5708000	44000	10
Deletion	Chr3	7450291	7450292	1
Deletion	Chr6	7496830	7496857	27
Deletion	Chr7	7744585	7744588	3	LOC_Os07g13530
Deletion	Chr5	8704347	8704753	406
Deletion	Chr5	9832590	9832591	1
Deletion	Chr5	10776438	10777125	687	LOC_Os05g18604
Deletion	Chr6	12282451	12282458	7
Deletion	Chr3	16638484	16638487	3
Deletion	Chr10	17248360	17248361	1	LOC_Os10g32950
Deletion	Chr9	18391754	18391777	23
Deletion	Chr10	19088936	19089031	95
Deletion	Chr8	19173473	19173475	2
Deletion	Chr1	19857218	19857226	8	LOC_Os01g35860
Deletion	Chr10	19893417	19893425	8
Deletion	Chr2	23883658	23883659	1
Deletion	Chr3	25972291	25972316	25	LOC_Os03g45960
Deletion	Chr4	27542256	27542262	6
Deletion	Chr7	28606745	28606764	19
Deletion	Chr2	34833793	34833805	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	6203339	6203342	4
Insertion	Chr2	10135304	10135307	4	LOC_Os02g17620
Insertion	Chr2	21026487	21026487	1
Insertion	Chr3	9791517	9791517	1	LOC_Os03g17600
Insertion	Chr6	22952191	22952195	5	LOC_Os06g38650

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	360285	664098	2
Inversion	Chr7	5448421	6586515
Inversion	Chr2	18694627	21538653
Inversion	Chr2	18695506	21538653
Inversion	Chr2	19588627	19698134
Inversion	Chr2	19588642	19698183
Inversion	Chr2	20013270	22235426	2
Inversion	Chr7	21407753	21849461	LOC_Os07g36544

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1222901	Chr8	16258229
Translocation	Chr5	10776448	Chr2	20013271	2
Translocation	Chr5	10777108	Chr2	22235415	2
Translocation	Chr8	26236742	Chr7	5448972	LOC_Os08g41530
Translocation	Chr8	26236743	Chr7	5448431	LOC_Os08g41530

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