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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	133442	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g01270
SBS	Chr1	22151523	C-T	HET	INTERGENIC
SBS	Chr10	19874563	C-T	HET	INTERGENIC
SBS	Chr10	3666837	T-G	HET	INTERGENIC
SBS	Chr10	9673060	G-T	HOMO	INTERGENIC
SBS	Chr12	11937625	C-T	HOMO	INTERGENIC
SBS	Chr12	14584981	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	5080653	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09640
SBS	Chr2	17259792	C-A	HOMO	INTRON
SBS	Chr2	29689089	G-A	HET	INTERGENIC
SBS	Chr2	4760785	G-C	HET	INTERGENIC
SBS	Chr3	13849734	G-A	HET	INTRON
SBS	Chr3	26963306	T-C	HOMO	INTRON
SBS	Chr3	33899928	T-A	HOMO	INTERGENIC
SBS	Chr3	7125261	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g13200
SBS	Chr3	7125262	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g13200
SBS	Chr4	8044599	T-A	HET	INTRON
SBS	Chr5	20324062	G-A	HET	INTERGENIC
SBS	Chr5	23775389	C-G	HET	INTERGENIC
SBS	Chr5	2490215	G-T	HET	INTERGENIC
SBS	Chr5	6324023	T-C	HET	INTERGENIC
SBS	Chr6	1158351	G-A	HET	INTERGENIC
SBS	Chr6	12141902	A-T	HOMO	INTRON
SBS	Chr7	1437986	G-C	HOMO	UTR_3_PRIME
SBS	Chr7	2295472	A-G	HET	INTERGENIC
SBS	Chr7	7681239	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13390
SBS	Chr8	11302187	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18950
SBS	Chr8	15373410	G-A	HOMO	INTERGENIC
SBS	Chr8	19403980	A-G	HET	INTERGENIC
SBS	Chr8	22360306	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35480
SBS	Chr8	8407825	T-C	HET	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2251805	2251809	4	LOC_Os09g04260
Deletion	Chr6	2528435	2528447	12
Deletion	Chr3	2787737	2787738	1
Deletion	Chr12	2875853	2875862	9
Deletion	Chr2	6530475	6530484	9	LOC_Os02g12490
Deletion	Chr8	7667470	7667471	1
Deletion	Chr8	8169854	8169856	2
Deletion	Chr3	10285771	10285772	1
Deletion	Chr5	17556308	17556325	17
Deletion	Chr9	18336554	18336556	2
Deletion	Chr5	19919630	19919635	5
Deletion	Chr7	24632156	24632172	16
Deletion	Chr3	26705145	26705153	8
Deletion	Chr7	26706316	26706317	1
Deletion	Chr6	30374423	30374433	10	LOC_Os06g50154
Deletion	Chr2	30444522	30444524	2
Deletion	Chr1	31855276	31855280	4

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11675483	11675486	4
Insertion	Chr1	4807434	4807435	2
Insertion	Chr12	6832920	6832923	4
Insertion	Chr2	18324112	18324115	4
Insertion	Chr3	15159939	15159942	4
Insertion	Chr3	25215573	25215576	4
Insertion	Chr6	28300445	28300448	4
Insertion	Chr7	8445864	8445864	1
Insertion	Chr8	27181136	27181136	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1919998	19701676	LOC_Os11g33310
Inversion	Chr5	7174091	8884642	2
Inversion	Chr5	7177927	8884616	LOC_Os05g15720

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	13771571	Chr2	7858247	LOC_Os02g14320
Translocation	Chr12	18590785	Chr4	10315006

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