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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32119800	C-T	HET	INTERGENIC
SBS	Chr1	32562525	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr10	10112618	C-A	HET	INTERGENIC
SBS	Chr10	15087542	G-C	HOMO	INTERGENIC
SBS	Chr10	17293220	C-A	HET	INTERGENIC
SBS	Chr10	7078956	C-T	HET	INTERGENIC
SBS	Chr11	18208431	G-A	HET	INTERGENIC
SBS	Chr11	20349159	G-A	HET	UTR_5_PRIME
SBS	Chr11	2955006	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g06190
SBS	Chr11	7496264	T-C	HET	INTERGENIC
SBS	Chr12	23092726	A-T	HET	INTRON
SBS	Chr2	32876122	C-T	HET	INTERGENIC
SBS	Chr3	14914732	C-A	HET	INTERGENIC
SBS	Chr3	25268083	A-T	HOMO	INTERGENIC
SBS	Chr3	25948898	G-A	HOMO	INTERGENIC
SBS	Chr3	6241093	A-G	HET	INTERGENIC
SBS	Chr4	12773920	A-T	HET	INTERGENIC
SBS	Chr4	30929378	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g52074
SBS	Chr4	7048372	G-A	HET	INTERGENIC
SBS	Chr6	11226185	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g19660
SBS	Chr6	13197621	G-A	HOMO	INTRON
SBS	Chr7	14042776	G-A	HET	INTERGENIC
SBS	Chr9	11963454	C-A	HET	INTERGENIC
SBS	Chr9	4387506	A-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	915192	915198	6	LOC_Os08g02350
Deletion	Chr8	1189772	1189774	2
Deletion	Chr4	4503337	4503338	1
Deletion	Chr11	7496243	7496253	10
Deletion	Chr6	10461170	10461180	10
Deletion	Chr8	12112051	12112062	11	LOC_Os08g20190
Deletion	Chr6	13178001	13218000	40000	6
Deletion	Chr1	13808152	13808156	4	LOC_Os01g24490
Deletion	Chr9	15136879	15136886	7
Deletion	Chr3	19150542	19150543	1
Deletion	Chr3	20596878	20596880	2
Deletion	Chr8	21885847	21885855	8
Deletion	Chr9	21975925	21975938	13
Deletion	Chr3	22459129	22459147	18
Deletion	Chr12	24086323	24086328	5
Deletion	Chr3	25727543	25727545	2
Deletion	Chr12	25966505	25966507	2
Deletion	Chr8	26854473	26854480	7
Deletion	Chr6	27019146	27019147	1
Deletion	Chr4	29120109	29120135	26
Deletion	Chr4	29192313	29192344	31
Deletion	Chr1	29243878	29243880	2
Deletion	Chr4	30012969	30014479	1510	LOC_Os04g50730
Deletion	Chr4	30147605	30147615	10	LOC_Os04g50930
Deletion	Chr4	30474807	30474812	5	LOC_Os04g51450
Deletion	Chr4	32014940	32014956	16	LOC_Os04g53720
Deletion	Chr1	32917694	32917706	12
Deletion	Chr3	34308234	34308236	2
Deletion	Chr1	36428912	36428915	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29661307	29661307	1
Insertion	Chr11	3710388	3710389	2
Insertion	Chr6	4375743	4375744	2	LOC_Os06g08740
Insertion	Chr9	20101915	20101916	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr11	5887083	6268973
Inversion	Chr8	12097252	12097518
Inversion	Chr8	22708958	22771115

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7628676	Chr6	27461564
Translocation	Chr11	7628940	Chr6	27115181	LOC_Os06g44860
Translocation	Chr3	22995006	Chr2	13225739	2
Translocation	Chr6	26908111	Chr4	30014471	2
Translocation	Chr6	27251109	Chr4	30013001	LOC_Os04g50730

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