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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	17660754	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33500
SBS	Chr11	15739419	G-A	HOMO	INTERGENIC
SBS	Chr11	21044249	C-G	HOMO	INTERGENIC
SBS	Chr11	27594197	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	11981018	C-G	HET	INTERGENIC
SBS	Chr12	25501116	G-A	HET	INTERGENIC
SBS	Chr12	25501117	G-A	HET	INTERGENIC
SBS	Chr12	2902563	A-G	HET	INTERGENIC
SBS	Chr2	15055315	C-T	HET	INTRON
SBS	Chr2	22679335	G-A	HET	INTERGENIC
SBS	Chr2	25553933	A-G	HET	INTERGENIC
SBS	Chr3	14839373	T-C	HET	INTERGENIC
SBS	Chr3	24029455	C-A	HET	INTRON
SBS	Chr3	26901296	T-A	HET	INTRON
SBS	Chr3	27675728	C-T	HOMO	INTERGENIC
SBS	Chr3	6013282	G-C	HET	UTR_3_PRIME
SBS	Chr4	10614253	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19114
SBS	Chr4	30631547	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51700
SBS	Chr4	31420928	T-C	HET	UTR_3_PRIME
SBS	Chr5	11697104	G-T	HET	INTERGENIC
SBS	Chr5	3258348	A-G	HET	INTRON
SBS	Chr6	12477654	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	16019292	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27480
SBS	Chr7	16502532	A-C	HET	INTERGENIC
SBS	Chr7	28539233	A-G	HET	INTRON
SBS	Chr7	456654	G-A	HET	INTRON
SBS	Chr7	9579090	G-A	HET	INTERGENIC
SBS	Chr8	21886442	G-T	HET	INTERGENIC
SBS	Chr8	2400596	A-G	HET	INTERGENIC
SBS	Chr8	24435829	C-A	HOMO	INTERGENIC
SBS	Chr8	26312058	T-C	HET	INTERGENIC
SBS	Chr8	4130343	G-A	HET	INTERGENIC
SBS	Chr9	14805442	A-G	HET	INTERGENIC
SBS	Chr9	18919457	C-T	HET	INTRON
SBS	Chr9	19147444	T-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3035477	3035479	2
Deletion	Chr2	3147587	3147588	1
Deletion	Chr5	3421189	3421195	6
Deletion	Chr8	3457189	3457235	46
Deletion	Chr4	3702167	3702249	82
Deletion	Chr9	5855588	5855589	1
Deletion	Chr7	9346054	9346064	10	LOC_Os07g16030
Deletion	Chr8	10775233	10775242	9
Deletion	Chr8	11795001	11843000	48000	8
Deletion	Chr1	13138741	13138747	6	LOC_Os01g23370
Deletion	Chr10	17129239	17129241	2
Deletion	Chr9	17610001	17633000	23000	7
Deletion	Chr11	18638931	18638943	12
Deletion	Chr2	18764747	18764748	1
Deletion	Chr3	18962001	19296000	334000	55
Deletion	Chr10	19595832	19595840	8
Deletion	Chr12	19906942	19906943	1
Deletion	Chr11	20132310	20132311	1
Deletion	Chr6	20261385	20261387	2
Deletion	Chr1	20704892	20704895	3
Deletion	Chr3	22120766	22120774	8
Deletion	Chr1	23251343	23251355	12
Deletion	Chr8	24053551	24054805	1254
Deletion	Chr3	25600757	25600758	1	LOC_Os03g45340
Deletion	Chr6	25738446	25738450	4
Deletion	Chr1	26339302	26339322	20
Deletion	Chr1	39363845	39363859	14
Deletion	Chr1	42154615	42154638	23

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	20063236	20063237	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11921456	11922076
Inversion	Chr9	20922936	21464827	LOC_Os09g37200

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	4278321	Chr10	5113844
Translocation	Chr4	11340734	Chr1	7494539
Translocation	Chr11	13220830	Chr7	9520581
Translocation	Chr8	24053557	Chr6	1862673
Translocation	Chr8	24054809	Chr6	1862626

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