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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4807427	A-G	HET	INTERGENIC
SBS	Chr10	461645	G-A	HET	INTRON
SBS	Chr10	55327	T-A	HET	INTRON
SBS	Chr11	21074471	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g35880
SBS	Chr12	17227431	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29100
SBS	Chr12	780328	A-G	HET	INTRON
SBS	Chr2	30599381	G-A	HET	INTERGENIC
SBS	Chr2	5594058	C-T	HET	INTERGENIC
SBS	Chr3	1363390	C-T	HOMO	INTERGENIC
SBS	Chr3	15274316	T-C	HOMO	INTERGENIC
SBS	Chr3	33268856	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g58390
SBS	Chr3	5501049	T-C	HOMO	INTERGENIC
SBS	Chr4	10934008	G-A	HOMO	INTRON
SBS	Chr4	19990480	T-A	HET	INTERGENIC
SBS	Chr4	9422951	G-T	HOMO	INTRON
SBS	Chr5	2601917	A-G	HET	INTRON
SBS	Chr5	8936867	A-G	HET	START_GAINED	LOC_Os05g15820
SBS	Chr6	14126192	C-T	HET	INTERGENIC
SBS	Chr7	10529968	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17800
SBS	Chr7	14830733	G-A	HOMO	STOP_GAINED	LOC_Os07g25830
SBS	Chr7	466524	C-T	HOMO	INTERGENIC
SBS	Chr9	10913480	T-C	HET	INTERGENIC
SBS	Chr9	17805445	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29330
SBS	Chr9	18828485	G-A	HET	INTERGENIC
SBS	Chr9	8213427	C-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	655343	655344	1
Deletion	Chr1	1606261	1606507	246
Deletion	Chr3	2034892	2034920	28
Deletion	Chr3	5546087	5546088	1
Deletion	Chr10	5832807	5832812	5
Deletion	Chr7	8347972	8347998	26	LOC_Os07g14630
Deletion	Chr6	8768454	8768463	9
Deletion	Chr4	12856046	12856051	5
Deletion	Chr10	13626825	13626847	22
Deletion	Chr6	14128001	14247000	119000	19
Deletion	Chr6	14249001	14363000	114000	15
Deletion	Chr3	15186938	15186939	1
Deletion	Chr6	15365621	15365623	2
Deletion	Chr10	19824460	19824471	11
Deletion	Chr5	25142543	25142578	35
Deletion	Chr11	25681786	25681803	17
Deletion	Chr6	26090291	26090399	108
Deletion	Chr5	26378727	26378743	16
Deletion	Chr2	34208841	34208858	17
Deletion	Chr3	34997421	34997435	14

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	16786358	16786359	2
Insertion	Chr6	6282435	6282435	1
Insertion	Chr7	12793853	12793855	3
Insertion	Chr7	23010388	23010389	2
Insertion	Chr9	13928288	13928289	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1615683	1693226	2
Inversion	Chr6	8553289	10897126	LOC_Os06g15090

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	634877	Chr2	17757469	LOC_Os06g02130
Translocation	Chr11	1475119	Chr9	18649921	LOC_Os11g03760
Translocation	Chr6	2939279	Chr1	1606279
Translocation	Chr11	6147101	Chr5	20415290	2
Translocation	Chr11	6147109	Chr5	20405732	LOC_Os11g11110
Translocation	Chr7	23733995	Chr6	14127760	LOC_Os07g39600
Translocation	Chr7	23734482	Chr6	14362411	LOC_Os07g39600
Translocation	Chr7	23734493	Chr6	1693234	2
Translocation	Chr7	23738926	Chr6	1615695	2
Translocation	Chr2	30160827	Chr1	42056819	LOC_Os02g49360
Translocation	Chr2	30162136	Chr1	42056819

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