Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28110045	C-A	HOMO	INTRON
SBS	Chr1	8621692	G-A	HET	INTERGENIC
SBS	Chr10	13654216	G-T	HET	INTERGENIC
SBS	Chr11	15234153	A-G	HOMO	INTERGENIC
SBS	Chr12	17567344	T-G	HOMO	INTERGENIC
SBS	Chr2	11535329	T-A	HOMO	INTERGENIC
SBS	Chr2	28838521	G-A	HOMO	INTERGENIC
SBS	Chr3	10308797	T-A	HET	INTERGENIC
SBS	Chr3	16896369	C-T	HOMO	INTERGENIC
SBS	Chr3	16896370	C-T	HOMO	INTERGENIC
SBS	Chr3	21887325	C-T	HOMO	INTERGENIC
SBS	Chr3	29493114	A-T	HET	INTRON
SBS	Chr3	32480655	G-T	HET	INTERGENIC
SBS	Chr4	20839093	C-G	HOMO	INTERGENIC
SBS	Chr4	3485399	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06610
SBS	Chr4	7764750	A-G	HET	INTERGENIC
SBS	Chr5	12513082	G-T	HET	INTERGENIC
SBS	Chr5	17315459	C-A	HET	INTERGENIC
SBS	Chr5	19710945	A-G	HET	INTERGENIC
SBS	Chr5	4453153	G-A	HET	INTERGENIC
SBS	Chr6	15861195	C-A	HET	INTERGENIC
SBS	Chr6	16251081	C-T	HET	INTERGENIC
SBS	Chr6	19395541	C-G	HET	INTERGENIC
SBS	Chr6	22497548	T-A	HET	INTRON
SBS	Chr6	23002125	T-A	HET	INTERGENIC
SBS	Chr6	8622029	G-A	HET	INTERGENIC
SBS	Chr7	25614728	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	18391490	G-C	HOMO	INTERGENIC
SBS	Chr8	18744425	G-A	HOMO	INTRON
SBS	Chr9	20793606	T-A	HET	INTERGENIC
SBS	Chr9	6807172	C-T	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2483626	2483627	1	LOC_Os09g04660
Deletion	Chr4	7080523	7280633	200110	32
Deletion	Chr8	7850273	7850275	2
Deletion	Chr12	9691915	9691917	2	LOC_Os12g16900
Deletion	Chr10	10015440	10015454	14
Deletion	Chr9	12822201	12822205	4
Deletion	Chr3	13081554	13081559	5
Deletion	Chr9	13467965	13467974	9
Deletion	Chr3	13475318	13475321	3
Deletion	Chr3	13667594	13667697	103	LOC_Os03g24070
Deletion	Chr7	16028907	16028908	1
Deletion	Chr5	16051460	16051463	3
Deletion	Chr3	16578233	16578236	3
Deletion	Chr3	16611001	16639000	28000	6
Deletion	Chr2	16847775	16847782	7
Deletion	Chr2	16985899	16985907	8
Deletion	Chr3	17250916	17250925	9
Deletion	Chr10	18265133	18265135	2
Deletion	Chr3	18753444	18753452	8
Deletion	Chr8	19496513	19496515	2
Deletion	Chr7	19724149	19724152	3
Deletion	Chr1	20957671	20964307	6636	2
Deletion	Chr4	22236500	22236508	8	LOC_Os04g36830
Deletion	Chr12	23464045	23464655	610
Deletion	Chr5	23702820	23702826	6
Deletion	Chr5	26814905	26814906	1
Deletion	Chr5	26836396	26839429	3033	LOC_Os05g46290
Deletion	Chr11	28805566	28805567	1
Deletion	Chr3	33766350	33766353	3
Deletion	Chr2	33987005	33987006	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	16198761	16198761	1
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320
Insertion	Chr4	31920391	31920392	2
Insertion	Chr9	10786503	10786506	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10179006	29088660	2
Inversion	Chr3	16610760	16897431
Inversion	Chr3	16639462	16897436

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8941256	Chr1	30237201
Translocation	Chr12	11163241	Chr9	4217758	LOC_Os12g19250
Translocation	Chr5	14705821	Chr2	12182619
Translocation	Chr5	26839394	Chr3	16639185	LOC_Os05g46290

Main menu