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Mutant Information |
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Mutant Name | FN492-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN492-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 19
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 3659044 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 34557049 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 25097589 | G-T | HET | INTERGENIC | |
SBS | Chr2 | 32121611 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 18993015 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 23937057 | T-C | HOMO | INTERGENIC | |
SBS | Chr3 | 32946127 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g57820 |
SBS | Chr4 | 27822499 | C-A | HOMO | UTR_3_PRIME | |
SBS | Chr5 | 135335 | T-C | HET | INTERGENIC | |
SBS | Chr5 | 6199093 | T-C | HET | UTR_3_PRIME | |
SBS | Chr5 | 29655192 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 29655193 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 26119594 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g43630 |
SBS | Chr8 | 5727026 | A-G | HET | INTERGENIC | |
SBS | Chr8 | 18185023 | C-A | HOMO | INTRON | |
SBS | Chr9 | 5148578 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 11016650 | A-C | HET | INTERGENIC | |
SBS | Chr10 | 1473997 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 19246515 | G-T | HET | INTERGENIC |
Deletions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr8 | 761127 | 761128 | 1 | |
Deletion | Chr2 | 2256495 | 2256496 | 1 | |
Deletion | Chr9 | 3449810 | 3449815 | 5 | |
Deletion | Chr11 | 5505298 | 5505315 | 17 | |
Deletion | Chr5 | 6159969 | 6160011 | 42 | |
Deletion | Chr3 | 8935555 | 8935556 | 1 | |
Deletion | Chr11 | 11171339 | 11171383 | 44 | |
Deletion | Chr9 | 14004270 | 14004275 | 5 | |
Deletion | Chr11 | 20758205 | 20758214 | 9 | |
Deletion | Chr5 | 21476510 | 21476522 | 12 | |
Deletion | Chr5 | 22430962 | 22430967 | 5 | LOC_Os05g38260 |
Deletion | Chr3 | 23736163 | 23737286 | 1123 | LOC_Os03g42630 |
Deletion | Chr8 | 24968796 | 24968797 | 1 | |
Deletion | Chr4 | 24974685 | 24974691 | 6 | |
Deletion | Chr7 | 26642480 | 26647077 | 4597 | 2 |
Deletion | Chr2 | 28075268 | 28075288 | 20 | LOC_Os02g46070 |
Deletion | Chr3 | 31359943 | 31359944 | 1 | LOC_Os03g55120 |
Deletion | Chr3 | 31891330 | 31891332 | 2 |
Insertions: 7
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 12990389 | 13153811 | LOC_Os10g25430 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 4686246 | Chr3 | 23737332 | LOC_Os07g09000 |