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Mutant Information

Mutant Name	FN492-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN492-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34557049	T-A	HET	INTERGENIC
SBS	Chr1	3659044	C-T	HET	INTERGENIC
SBS	Chr10	1473997	C-T	HET	INTERGENIC
SBS	Chr11	19246515	G-T	HET	INTERGENIC
SBS	Chr2	25097589	G-T	HET	INTERGENIC
SBS	Chr2	32121611	C-T	HET	INTERGENIC
SBS	Chr3	18993015	C-A	HET	INTERGENIC
SBS	Chr3	23937057	T-C	HOMO	INTERGENIC
SBS	Chr3	32946127	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g57820
SBS	Chr4	27822499	C-A	HOMO	UTR_3_PRIME
SBS	Chr5	135335	T-C	HET	INTERGENIC
SBS	Chr5	29655192	T-A	HET	INTERGENIC
SBS	Chr5	29655193	T-A	HET	INTERGENIC
SBS	Chr5	6199093	T-C	HET	UTR_3_PRIME
SBS	Chr7	26119594	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g43630
SBS	Chr8	18185023	C-A	HOMO	INTRON
SBS	Chr8	5727026	A-G	HET	INTERGENIC
SBS	Chr9	11016650	A-C	HET	INTERGENIC
SBS	Chr9	5148578	G-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	761127	761128	1
Deletion	Chr2	2256495	2256496	1
Deletion	Chr9	3449810	3449815	5
Deletion	Chr11	5505298	5505315	17
Deletion	Chr5	6159969	6160011	42
Deletion	Chr3	8935555	8935556	1
Deletion	Chr11	11171339	11171383	44
Deletion	Chr9	14004270	14004275	5
Deletion	Chr11	20758205	20758214	9
Deletion	Chr5	21476510	21476522	12
Deletion	Chr5	22430962	22430967	5	LOC_Os05g38260
Deletion	Chr3	23736163	23737286	1123	LOC_Os03g42630
Deletion	Chr8	24968796	24968797	1
Deletion	Chr4	24974685	24974691	6
Deletion	Chr7	26642480	26647077	4597	2
Deletion	Chr2	28075268	28075288	20	LOC_Os02g46070
Deletion	Chr3	31359943	31359944	1	LOC_Os03g55120
Deletion	Chr3	31891330	31891332	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33877460	33877460	1
Insertion	Chr12	17873985	17873985	1
Insertion	Chr2	12416557	12416561	5
Insertion	Chr3	12624598	12624600	3
Insertion	Chr3	9327526	9327526	1
Insertion	Chr8	10598810	10598811	2
Insertion	Chr8	15238874	15238875	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12990389	13153811	LOC_Os10g25430

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4686246	Chr3	23737332	LOC_Os07g09000