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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	17862060	C-T	HET	INTRON
SBS	Chr11	20388127	C-A	HET	INTERGENIC
SBS	Chr11	3354420	T-A	HET	INTERGENIC
SBS	Chr11	4680192	C-T	HET	INTERGENIC
SBS	Chr11	5278406	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g09850
SBS	Chr12	12347218	C-T	HET	INTERGENIC
SBS	Chr12	13766744	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24170
SBS	Chr12	13766745	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24170
SBS	Chr12	8507304	T-A	HET	INTERGENIC
SBS	Chr2	10865860	T-A	HET	INTRON
SBS	Chr2	10865861	G-A	HET	INTRON
SBS	Chr3	13401591	G-T	HET	INTERGENIC
SBS	Chr3	18817260	A-G	HOMO	INTERGENIC
SBS	Chr3	30801981	T-C	HET	INTERGENIC
SBS	Chr4	21215831	G-A	HOMO	UTR_3_PRIME
SBS	Chr4	21988435	T-A	HOMO	INTERGENIC
SBS	Chr4	8814400	C-T	HET	INTERGENIC
SBS	Chr4	8814401	C-T	HET	INTERGENIC
SBS	Chr5	11972884	C-T	HOMO	INTERGENIC
SBS	Chr5	6924144	C-T	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr8	21336687	C-T	HOMO	INTERGENIC
SBS	Chr8	5194750	G-A	HET	INTERGENIC
SBS	Chr8	9753069	G-A	HOMO	SPLICE_SITE_REGION
SBS	Chr9	5032299	C-T	HET	INTERGENIC
SBS	Chr9	5872743	A-T	HOMO	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	255149	255152	3
Deletion	Chr7	2018857	2018858	1
Deletion	Chr11	3101599	3101600	1	LOC_Os11g06420
Deletion	Chr1	4044964	4044965	1
Deletion	Chr1	7871860	7871862	2
Deletion	Chr1	7882888	7882890	2
Deletion	Chr3	10683673	10683676	3
Deletion	Chr7	12296815	12296823	8
Deletion	Chr7	13664633	13664647	14	LOC_Os07g24100
Deletion	Chr10	14543125	14543133	8	LOC_Os10g28020
Deletion	Chr11	14992007	14992008	1
Deletion	Chr6	15418803	15418809	6
Deletion	Chr1	20708341	20708347	6
Deletion	Chr8	21314366	21314377	11
Deletion	Chr8	23711403	23711411	8	LOC_Os08g37420
Deletion	Chr8	25413407	25413413	6
Deletion	Chr6	26311117	26311119	2
Deletion	Chr7	27826921	27826922	1
Deletion	Chr1	27962537	27962541	4
Deletion	Chr3	28736207	28736210	3	LOC_Os03g50350
Deletion	Chr6	29526912	29526916	4
Deletion	Chr4	33191958	33191970	12

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr8	20892775	20892776	2
Insertion	Chr8	23708219	23708219	1
Insertion	Chr8	23708226	23708226	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3083854	3107451	2
Inversion	Chr10	6833676	9734746	2
Inversion	Chr8	22162555	22546352
Inversion	Chr3	28629670	28678003	LOC_Os03g50300

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	13467141	Chr1	26060840	LOC_Os01g45880

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