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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13719910	T-C	HOMO	INTERGENIC
SBS	Chr1	14675904	T-C	HOMO	INTERGENIC
SBS	Chr1	15247579	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27320
SBS	Chr1	15248113	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27320
SBS	Chr1	41385197	C-T	HOMO	INTRON
SBS	Chr2	877767	C-T	HET	INTRON
SBS	Chr2	9597062	C-T	HET	INTERGENIC
SBS	Chr2	16571054	C-T	HET	INTERGENIC
SBS	Chr3	1034319	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g02750
SBS	Chr3	21582374	G-C	HET	INTERGENIC
SBS	Chr3	34712106	C-T	HET	INTERGENIC
SBS	Chr4	10549261	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18980
SBS	Chr5	9371269	C-T	HET	INTERGENIC
SBS	Chr5	23031233	G-A	HET	INTRON
SBS	Chr6	11844796	G-C	HET	INTERGENIC
SBS	Chr6	14270898	C-T	HOMO	INTERGENIC
SBS	Chr6	22413038	T-G	HOMO	INTERGENIC
SBS	Chr6	25433218	G-T	HET	INTERGENIC
SBS	Chr6	30786817	A-T	HET	INTERGENIC
SBS	Chr7	26169714	G-A	HOMO	INTERGENIC
SBS	Chr8	3176	C-T	HOMO	INTERGENIC
SBS	Chr8	5376024	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	10019527	T-G	HET	INTERGENIC
SBS	Chr8	13442788	G-T	HET	INTERGENIC
SBS	Chr8	16573057	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27120
SBS	Chr8	25559460	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40370
SBS	Chr9	59499	G-T	HET	INTERGENIC
SBS	Chr9	19794790	A-T	HET	INTERGENIC
SBS	Chr10	6720514	T-A	HET	INTERGENIC
SBS	Chr11	9939322	G-C	HOMO	INTERGENIC
SBS	Chr11	10483476	C-G	HOMO	INTERGENIC
SBS	Chr11	27321491	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45130
SBS	Chr12	15419689	T-C	HET	INTERGENIC
SBS	Chr12	17063681	C-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3907069	3907071	2	LOC_Os06g08070
Deletion	Chr7	5035497	5035512	15
Deletion	Chr4	5521845	5521847	2
Deletion	Chr5	5738129	5738159	30
Deletion	Chr6	8753492	8753501	9
Deletion	Chr6	10423667	10423983	316
Deletion	Chr3	11360859	11360865	6
Deletion	Chr4	13092623	13093135	512
Deletion	Chr10	17094620	17094627	7
Deletion	Chr8	17269880	17269882	2
Deletion	Chr7	17646569	17646595	26
Deletion	Chr12	17795208	17795215	7
Deletion	Chr9	19468296	19468297	1
Deletion	Chr6	20337816	20337829	13
Deletion	Chr7	22838278	22838279	1
Deletion	Chr7	25014618	25014625	7
Deletion	Chr11	25799782	25799789	7
Deletion	Chr4	25886459	25886489	30	LOC_Os04g43730
Deletion	Chr4	25902602	25902608	6
Deletion	Chr8	26013511	26013512	1
Deletion	Chr7	27112606	27112628	22
Deletion	Chr4	30540327	30540328	1
Deletion	Chr3	34068227	34068231	4
Deletion	Chr1	35503316	35503322	6

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	19576681	19576683	3
Insertion	Chr11	16764607	16764608	2
Insertion	Chr11	22634284	22634285	2
Insertion	Chr2	7763376	7763377	2
Insertion	Chr1	13641210	13641210	1
Insertion	Chr2	2937606	2937606	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1914923	8868111
Inversion	Chr12	1914948	8884886
Inversion	Chr1	39117073	39117196	LOC_Os01g67364

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3902011	Chr1	41304730	LOC_Os03g07680
Translocation	Chr3	3902115	Chr1	41304744	LOC_Os03g07680
Translocation	Chr6	10423675	Chr2	28715310	LOC_Os06g17930
Translocation	Chr6	10423979	Chr2	28715281	LOC_Os06g17930
Translocation	Chr11	13095234	Chr5	20699939
Translocation	Chr12	20138349	Chr5	13277467	LOC_Os12g33280
Translocation	Chr10	22679747	Chr5	16845607

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