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Mutant Information

Mutant NameFN497-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN497-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 46
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112480024C-THOMOINTRON
SBSChr118799251T-CHETINTERGENIC
SBSChr15918512G-AHOMONON_SYNONYMOUS_CODINGLOC_Os01g11080
SBSChr16915066A-THOMOUTR_5_PRIME
SBSChr1010417002T-CHETINTRON
SBSChr1016342588A-GHETINTERGENIC
SBSChr1022378616C-AHOMOINTERGENIC
SBSChr104365086G-THETINTERGENIC
SBSChr108159500A-GHETINTERGENIC
SBSChr108311094T-AHETINTERGENIC
SBSChr1120459456A-GHETINTRON
SBSChr112948516G-AHETINTERGENIC
SBSChr119207577C-THETINTERGENIC
SBSChr1223831875C-AHETNON_SYNONYMOUS_CODINGLOC_Os12g38790
SBSChr128264352C-THETINTERGENIC
SBSChr224242129T-AHOMOINTRON
SBSChr325359798C-THETINTERGENIC
SBSChr416490646A-CHETINTERGENIC
SBSChr416490653T-GHETINTERGENIC
SBSChr41787471C-THETINTERGENIC
SBSChr423338071G-THOMOINTERGENIC
SBSChr46879465T-CHETINTERGENIC
SBSChr49537826C-THETSYNONYMOUS_CODING
SBSChr520526044G-AHETINTERGENIC
SBSChr54668200C-THETINTERGENIC
SBSChr610633075C-THETINTERGENIC
SBSChr620574792C-THETNON_SYNONYMOUS_CODINGLOC_Os06g35280
SBSChr660259A-GHETINTERGENIC
SBSChr6724767A-THOMOINTERGENIC
SBSChr711432670G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g19320
SBSChr715142861G-AHETSYNONYMOUS_CODING
SBSChr72575327G-AHETINTERGENIC
SBSChr75490354C-THETINTERGENIC
SBSChr79211739G-AHETINTRON
SBSChr81343838C-THOMOINTERGENIC
SBSChr818660253A-GHOMOSYNONYMOUS_CODING
SBSChr824349086A-GHOMOINTERGENIC
SBSChr825304134A-GHOMOINTERGENIC
SBSChr82596687C-THOMOINTERGENIC
SBSChr85519770T-AHETINTERGENIC
SBSChr85519771A-CHETINTERGENIC
SBSChr87461257T-AHETINTERGENIC
SBSChr87461258C-THETINTERGENIC
SBSChr9400937G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g01560
SBSChr97260586T-CHOMOINTERGENIC
SBSChr99419816C-THOMOINTERGENIC

Deletions: 19
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr4456730945673145
DeletionChr4648434764843525
DeletionChr9790187079018744
DeletionChr7101424401014246121LOC_Os07g17220
DeletionChr1010946193109461952LOC_Os10g21390
DeletionChr912932235129322361
DeletionChr814038305140383072
DeletionChr1214102082141020831
DeletionChr715811478158135852107LOC_Os07g27200
DeletionChr318721319187213267
DeletionChr423331870233318722
DeletionChr123670653236706574
DeletionChr123710607237106081
DeletionChr523859520238612471727
DeletionChr72429178524292512727
DeletionChr72490250024913176106765
DeletionChr225479712254797131
DeletionChr328923212289232131
DeletionChr628952245289533961151LOC_Os06g47834

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr218556721185567266LOC_Os02g31060image
InsertionChr434449767344497671
InsertionChr6233120082331201912
InsertionChr818779120187791212

Inversions: 6
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr117561601793064LOC_Os01g04030
InversionChr161258717135910LOC_Os01g12880
InversionChr101300863813120884LOC_Os10g25200
InversionChr82048997520761121
InversionChr724734230254111852
InversionChr724902119254050602

Translocations: 12
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr87165821Chr7254050612
TranslocationChr109079951Chr7249025042
TranslocationChr109079958Chr7249132042
TranslocationChr1013901025Chr628953420LOC_Os06g47834
TranslocationChr1013901031Chr628952249LOC_Os06g47834
TranslocationChr724291801Chr36038268
TranslocationChr724292107Chr36038265
TranslocationChr724292498Chr14833244
TranslocationChr724902131Chr2174497382
TranslocationChr724913925Chr2174497342
TranslocationChr625899909Chr523861243LOC_Os06g43090
TranslocationChr625899935Chr523859528LOC_Os06g43090