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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14757078	T-A	HET	INTRON
SBS	Chr10	18380577	C-T	HOMO	INTERGENIC
SBS	Chr10	22362595	C-T	HOMO	INTERGENIC
SBS	Chr10	4490047	G-C	HOMO	INTERGENIC
SBS	Chr10	6667519	A-G	HET	INTRON
SBS	Chr10	7992525	T-G	HOMO	INTERGENIC
SBS	Chr11	21036215	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	13536949	G-C	HET	INTERGENIC
SBS	Chr2	14708285	G-A	HET	STOP_GAINED	LOC_Os02g25260
SBS	Chr2	5552368	A-G	HET	INTERGENIC
SBS	Chr3	14158330	T-A	HET	INTRON
SBS	Chr3	17164073	A-G	HET	INTRON
SBS	Chr3	18896686	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g33040
SBS	Chr3	6725096	G-T	HET	INTERGENIC
SBS	Chr4	20777926	G-T	HOMO	INTERGENIC
SBS	Chr5	26240465	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45210
SBS	Chr6	18092851	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g31140
SBS	Chr6	2435792	T-C	HET	INTRON
SBS	Chr6	2597821	C-A	HET	INTERGENIC
SBS	Chr7	19743004	G-A	HOMO	INTERGENIC
SBS	Chr7	19743007	G-A	HOMO	INTERGENIC
SBS	Chr7	26479962	T-A	HET	INTERGENIC
SBS	Chr7	28002985	T-C	HOMO	INTRON
SBS	Chr7	6129785	G-T	HET	INTERGENIC
SBS	Chr7	6924803	A-T	HET	INTERGENIC
SBS	Chr8	16247298	T-A	HET	STOP_GAINED	LOC_Os08g26710
SBS	Chr8	20671425	A-G	HET	SPLICE_SITE_REGION
SBS	Chr8	6992808	T-C	HET	INTRON
SBS	Chr9	14370885	T-A	HET	INTRON
SBS	Chr9	15488033	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	19021921	G-A	HET	INTRON
SBS	Chr9	22697818	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g39520
SBS	Chr9	3444509	C-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	377649	377680	31
Deletion	Chr11	2939606	2939607	1	LOC_Os11g06170
Deletion	Chr6	5685874	5685884	10
Deletion	Chr3	6736449	6736455	6	LOC_Os03g12650
Deletion	Chr10	7960393	7960397	4
Deletion	Chr3	8008072	8008077	5	LOC_Os03g14720
Deletion	Chr9	8976503	8976511	8
Deletion	Chr10	9613926	9613935	9
Deletion	Chr4	12954300	12954302	2
Deletion	Chr9	13821960	13821961	1
Deletion	Chr11	15514388	15514389	1
Deletion	Chr9	15718166	15718172	6
Deletion	Chr12	15764392	15764397	5	LOC_Os12g26890
Deletion	Chr3	20645883	20645891	8	LOC_Os03g37250
Deletion	Chr9	22181848	22181854	6	LOC_Os09g38560
Deletion	Chr1	22638248	22638249	1
Deletion	Chr4	22905876	22905878	2
Deletion	Chr2	25989735	25989737	2
Deletion	Chr5	26316860	26316866	6
Deletion	Chr6	26952516	26952524	8
Deletion	Chr2	33985898	33985900	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21922368	21922369	2
Insertion	Chr11	19639316	19639327	12
Insertion	Chr2	15646552	15646552	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	12100294	17314820	LOC_Os08g28390
Inversion	Chr8	17190439	17314811	LOC_Os08g28390
Inversion	Chr8	17190453	17314821	LOC_Os08g28390
Inversion	Chr5	22079026	22660675	LOC_Os05g37720
Inversion	Chr5	22079038	22658981	LOC_Os05g37720
Inversion	Chr5	22433512	22687714	LOC_Os05g38260
Inversion	Chr5	22658974	22687877
Inversion	Chr1	35001387	35057865	LOC_Os01g60520

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8939854	Chr8	16045154	LOC_Os11g16248
Translocation	Chr4	16363770	Chr1	23524841	LOC_Os04g27680
Translocation	Chr8	24720650	Chr3	24395745	LOC_Os08g39140
Translocation	Chr11	26925423	Chr8	1219481	LOC_Os08g02870

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