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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13823576	A-G	HET	INTRON
SBS	Chr1	18366849	A-T	HET	INTERGENIC
SBS	Chr1	29844833	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51920
SBS	Chr1	35902994	T-A	HET	UTR_5_PRIME
SBS	Chr10	21795602	C-T	HOMO	INTERGENIC
SBS	Chr12	10554689	G-A	HET	INTERGENIC
SBS	Chr2	13503045	T-C	HET	INTRON
SBS	Chr2	20498490	C-A	HOMO	INTERGENIC
SBS	Chr2	35425528	C-T	HET	UTR_3_PRIME
SBS	Chr2	4862115	T-G	HET	INTRON
SBS	Chr2	5196003	T-A	HET	INTERGENIC
SBS	Chr3	24471638	A-C	HOMO	UTR_5_PRIME
SBS	Chr3	34721688	C-T	HET	INTERGENIC
SBS	Chr3	7617546	C-A	HET	INTRON
SBS	Chr3	9554405	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17170
SBS	Chr4	17519364	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	28724018	T-G	HET	UTR_3_PRIME
SBS	Chr5	10830390	G-A	HET	INTERGENIC
SBS	Chr5	4297396	C-T	HOMO	INTRON
SBS	Chr5	4297401	G-T	HOMO	INTRON
SBS	Chr5	4297402	G-T	HOMO	INTRON
SBS	Chr5	7990544	C-T	HOMO	INTERGENIC
SBS	Chr6	14096177	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24090
SBS	Chr7	6514062	G-A	HET	INTERGENIC
SBS	Chr8	15258416	A-T	HET	INTRON
SBS	Chr8	17790522	C-T	HET	INTERGENIC
SBS	Chr8	7288737	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	10501082	T-G	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	676001	740000	64000	6
Deletion	Chr4	1659001	1730000	71000	7
Deletion	Chr11	3586595	3586599	4
Deletion	Chr5	7120001	7239000	119000	22
Deletion	Chr6	7937111	7937116	5
Deletion	Chr9	8852022	8852029	7
Deletion	Chr3	9773750	9773753	3
Deletion	Chr12	11115743	11115754	11	LOC_Os12g19150
Deletion	Chr5	11484537	11484542	5
Deletion	Chr11	13418147	13418159	12
Deletion	Chr12	13434338	13434343	5
Deletion	Chr6	14184883	14184886	3
Deletion	Chr6	15981165	15981166	1	LOC_Os06g28140
Deletion	Chr7	16583612	16583613	1
Deletion	Chr3	17550937	17550961	24
Deletion	Chr10	18428618	18428621	3
Deletion	Chr1	24341611	24341616	5
Deletion	Chr5	26106264	26106286	22	LOC_Os05g44916
Deletion	Chr6	26843014	26843028	14
Deletion	Chr8	27941254	27941264	10
Deletion	Chr11	28907908	28907913	5
Deletion	Chr2	34452107	34452118	11

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	33853730	33853731	2	LOC_Os02g55290
Insertion	Chr2	5449446	5449448	3
Insertion	Chr2	8950121	8950122	2
Insertion	Chr3	15634727	15634776	50

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	20769094	21410383
Inversion	Chr1	21410395	22207663	LOC_Os01g39399

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3653097	Chr9	6641921
Translocation	Chr10	3859682	Chr1	22206236	LOC_Os10g07310
Translocation	Chr10	3859705	Chr1	22207695	2
Translocation	Chr12	13389109	Chr7	19610116
Translocation	Chr7	18517408	Chr4	32774086	LOC_Os04g55120
Translocation	Chr7	18518403	Chr4	32774039	LOC_Os04g55120
Translocation	Chr8	28319007	Chr5	5289557

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