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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12370114	C-T	HET	INTERGENIC
SBS	Chr1	21469563	C-T	HET	INTERGENIC
SBS	Chr1	26422815	C-T	HOMO	INTERGENIC
SBS	Chr1	3688320	G-T	HET	INTERGENIC
SBS	Chr1	8537912	T-C	HET	INTERGENIC
SBS	Chr10	2303754	C-T	HOMO	INTERGENIC
SBS	Chr10	7833931	C-T	HET	INTRON
SBS	Chr11	20494168	G-A	HET	INTERGENIC
SBS	Chr11	23497659	C-G	HET	INTERGENIC
SBS	Chr12	10991695	G-A	HET	INTERGENIC
SBS	Chr2	25331494	G-A	HET	INTRON
SBS	Chr2	34488797	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56340
SBS	Chr3	13163622	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	25981579	G-A	HOMO	INTRON
SBS	Chr3	26280038	T-C	HET	INTERGENIC
SBS	Chr3	28161928	G-A	HOMO	INTERGENIC
SBS	Chr4	3439630	C-A	HOMO	INTERGENIC
SBS	Chr5	21535190	G-T	HET	INTERGENIC
SBS	Chr5	24451751	G-C	HET	INTERGENIC
SBS	Chr5	26406050	G-A	HET	INTERGENIC
SBS	Chr5	6038094	C-A	HOMO	STOP_GAINED	LOC_Os05g10890
SBS	Chr6	20009880	C-T	HET	INTERGENIC
SBS	Chr6	22125447	A-G	HET	INTRON
SBS	Chr6	30851725	G-A	HET	INTERGENIC
SBS	Chr6	5278420	A-G	HOMO	INTRON
SBS	Chr7	12351639	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g22100
SBS	Chr7	25487308	T-A	HET	INTERGENIC
SBS	Chr8	18529424	G-A	HOMO	INTERGENIC
SBS	Chr8	8146408	A-G	HET	INTERGENIC
SBS	Chr8	8324176	T-C	HET	INTERGENIC
SBS	Chr9	21823852	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	9469134	G-A	HET	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	761146	761151	5	LOC_Os05g02350
Deletion	Chr5	2295098	2295100	2
Deletion	Chr2	5142113	5142127	14
Deletion	Chr1	5265401	5265412	11
Deletion	Chr3	5745217	5745220	3	LOC_Os03g11140
Deletion	Chr8	5753975	5753978	3
Deletion	Chr4	6678001	7183000	505000	77
Deletion	Chr5	8517157	8517161	4	LOC_Os05g15030
Deletion	Chr1	8537901	8537902	1
Deletion	Chr11	9918086	9918091	5
Deletion	Chr11	11006491	11006493	2
Deletion	Chr3	12250949	12250957	8
Deletion	Chr6	13851109	13851119	10
Deletion	Chr12	15528279	15528698	419	LOC_Os12g26560
Deletion	Chr9	16660373	16660374	1
Deletion	Chr4	18189254	18189257	3
Deletion	Chr7	19011443	19011445	2
Deletion	Chr12	20728406	20728407	1
Deletion	Chr12	21248336	21248337	1	LOC_Os12g34900
Deletion	Chr2	23682021	23682022	1
Deletion	Chr1	24796682	24814493	17811	3
Deletion	Chr5	25093144	25121429	28285	LOC_Os05g43210
Deletion	Chr8	26670360	26670361	1	LOC_Os08g42230
Deletion	Chr8	26689001	26708000	19000	5
Deletion	Chr4	27274001	27274006	5
Deletion	Chr2	27658247	27658279	32
Deletion	Chr1	28084808	28084820	12
Deletion	Chr4	30735901	30735904	3
Deletion	Chr2	33251740	33251762	22
Deletion	Chr1	40107058	40107060	2	LOC_Os01g69030

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	16352748	16352749	2
Insertion	Chr2	2198190	2198190	1
Insertion	Chr2	5399911	5399911	1
Insertion	Chr4	8338683	8338683	1
Insertion	Chr9	18750405	18750405	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6678069	7292364	LOC_Os04g12130
Inversion	Chr4	7182634	7292363	LOC_Os04g13020
Inversion	Chr8	17685247	18482689	2
Inversion	Chr8	17685276	18482707	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	7954255	Chr1	15637525
Translocation	Chr8	20606601	Chr1	27980090
Translocation	Chr11	23187882	Chr4	16367928
Translocation	Chr4	30287048	Chr3	744342	LOC_Os03g02230

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