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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13690112	G-A	HET	INTRON
SBS	Chr1	13748977	C-T	HET	INTERGENIC
SBS	Chr1	20494478	G-C	HET	INTRON
SBS	Chr1	21078033	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	32341466	C-G	HOMO	INTERGENIC
SBS	Chr1	36801536	G-A	HET	INTERGENIC
SBS	Chr11	12619738	G-C	HOMO	INTERGENIC
SBS	Chr11	5181292	A-G	HET	INTERGENIC
SBS	Chr2	1406508	A-C	HOMO	INTRON
SBS	Chr2	29006316	A-T	HET	INTRON
SBS	Chr2	432726	G-A	HOMO	INTERGENIC
SBS	Chr3	19785143	G-A	HET	INTRON
SBS	Chr3	28551332	C-A	HET	INTERGENIC
SBS	Chr3	34252902	T-G	HET	INTERGENIC
SBS	Chr4	1972142	T-G	HET	INTERGENIC
SBS	Chr4	2036185	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr4	23929338	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	5918557	G-T	HOMO	INTERGENIC
SBS	Chr5	26962696	T-C	HET	INTERGENIC
SBS	Chr5	4325854	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08000
SBS	Chr5	4851916	G-A	HOMO	INTERGENIC
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr7	21116013	G-A	HET	INTERGENIC
SBS	Chr8	4675859	C-A	HET	INTERGENIC
SBS	Chr8	8104073	A-G	HET	INTERGENIC
SBS	Chr9	5529273	G-T	HET	INTRON

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	3729557	3729576	19
Deletion	Chr12	4842056	4842057	1
Deletion	Chr4	7205357	7205358	1
Deletion	Chr11	8391253	8391256	3
Deletion	Chr7	8888995	8889004	9
Deletion	Chr10	10103376	10103394	18	LOC_Os10g20120
Deletion	Chr7	10176783	10176788	5	LOC_Os07g17250
Deletion	Chr10	11725628	11725631	3
Deletion	Chr2	12620105	12620602	497	LOC_Os02g21269
Deletion	Chr6	13649684	13649685	1
Deletion	Chr8	14583604	14583606	2
Deletion	Chr1	16050793	16050800	7	LOC_Os01g28680
Deletion	Chr8	18032045	18032054	9
Deletion	Chr1	19920269	19920292	23
Deletion	Chr12	20028766	20028775	9	LOC_Os12g33100
Deletion	Chr4	21472684	21472686	2
Deletion	Chr11	21730762	21730766	4
Deletion	Chr9	21781824	21781835	11	LOC_Os09g37800
Deletion	Chr7	22518056	22518064	8
Deletion	Chr1	24236746	24236765	19
Deletion	Chr4	26298435	26298443	8
Deletion	Chr5	27924660	27950735	26075	5
Deletion	Chr1	28167595	28167606	11
Deletion	Chr1	29557418	29557424	6
Deletion	Chr1	34717374	34717379	5
Deletion	Chr3	34957675	34957683	8
Deletion	Chr2	35858290	35859608	1318	LOC_Os02g58690

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	28169322	28169322	1	LOC_Os01g49024
Insertion	Chr11	16272754	16272754	1
Insertion	Chr12	20711488	20711489	2
Insertion	Chr2	17345010	17345010	1
Insertion	Chr3	31100647	31100648	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr6	7422461	7422461	1
Insertion	Chr9	10246137	10246138	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7175354	7484065
Inversion	Chr11	28440037	28440243

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	60357	Chr2	8120311	LOC_Os02g14720
Translocation	Chr9	1556825	Chr8	3196602	LOC_Os08g05920
Translocation	Chr9	1556834	Chr8	3200015	LOC_Os08g05930
Translocation	Chr11	6946115	Chr4	34439463	LOC_Os11g12430
Translocation	Chr9	7065708	Chr2	12620123	LOC_Os09g12360
Translocation	Chr6	16350750	Chr1	8713153
Translocation	Chr11	17772501	Chr2	16734757
Translocation	Chr4	32799482	Chr3	5096521

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