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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN505-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN505-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4687932	A-C	HOMO	INTERGENIC
SBS	Chr1	5905242	G-A	HET	START_GAINED	LOC_Os01g11054
SBS	Chr1	6099334	C-A	HET	INTERGENIC
SBS	Chr1	26689124	A-G	HET	INTERGENIC
SBS	Chr1	40964574	T-A	HOMO	INTERGENIC
SBS	Chr2	11027866	C-T	HET	INTRON
SBS	Chr2	11027868	C-T	HET	INTRON
SBS	Chr3	520521	T-A	HET	INTERGENIC
SBS	Chr3	520522	A-T	HET	INTERGENIC
SBS	Chr3	520523	C-A	HET	INTERGENIC
SBS	Chr3	2178545	C-A	HET	INTERGENIC
SBS	Chr3	4937274	A-T	HET	INTRON
SBS	Chr3	12169676	T-A	HOMO	INTERGENIC
SBS	Chr3	15797482	T-A	HOMO	INTERGENIC
SBS	Chr3	18699629	G-C	HOMO	INTERGENIC
SBS	Chr3	24674070	A-T	HOMO	INTERGENIC
SBS	Chr3	26922428	C-T	HET	INTRON
SBS	Chr3	28984926	A-G	HET	INTERGENIC
SBS	Chr3	33784419	A-T	HOMO	INTRON
SBS	Chr4	10521172	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g18920
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	28681303	G-A	HOMO	INTERGENIC
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	10168348	C-A	HET	INTERGENIC
SBS	Chr5	15010311	A-T	HET	INTERGENIC
SBS	Chr5	15010312	C-T	HET	INTERGENIC
SBS	Chr6	1259282	T-A	HET	SPLICE_SITE_REGION
SBS	Chr6	1714082	A-G	HET	INTERGENIC
SBS	Chr6	12549564	G-T	HET	INTERGENIC
SBS	Chr7	3602334	A-G	HET	INTRON
SBS	Chr7	10039712	A-T	HOMO	INTERGENIC
SBS	Chr7	25572536	G-A	HOMO	UTR_3_PRIME
SBS	Chr8	10242302	C-A	HET	INTERGENIC
SBS	Chr8	15307845	G-A	HOMO	INTRON
SBS	Chr8	25226284	C-A	HET	INTERGENIC
SBS	Chr10	4917210	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g09090
SBS	Chr10	17072542	T-C	HET	UTR_3_PRIME
SBS	Chr10	21838019	C-A	HET	INTERGENIC
SBS	Chr10	21838020	G-A	HET	INTERGENIC
SBS	Chr10	21838023	G-A	HET	INTERGENIC
SBS	Chr10	21883447	C-T	HET	INTERGENIC
SBS	Chr10	22194451	A-T	HET	UTR_5_PRIME
SBS	Chr11	17340565	A-C	HET	INTERGENIC
SBS	Chr12	10411372	G-T	HET	INTERGENIC
SBS	Chr12	12473375	G-A	HET	INTERGENIC
SBS	Chr12	21511317	G-A	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1577529	1577531	2
Deletion	Chr10	4374509	4378292	3783	LOC_Os10g08080
Deletion	Chr10	4496914	4600903	103989	14
Deletion	Chr10	7858841	7858842	1	LOC_Os10g15010
Deletion	Chr7	10053787	10054761	974
Deletion	Chr1	14351001	14513000	162000	18
Deletion	Chr9	15290781	15290813	32	LOC_Os09g25500
Deletion	Chr10	16363686	16363687	1
Deletion	Chr1	17071364	17071365	1
Deletion	Chr9	18399984	18399985	1
Deletion	Chr9	18555424	18555427	3
Deletion	Chr12	20092714	20092721	7
Deletion	Chr8	20116803	20116831	28
Deletion	Chr12	20841004	20841007	3	LOC_Os12g34380
Deletion	Chr4	21831278	21831288	10
Deletion	Chr3	22121964	22121980	16
Deletion	Chr7	23385734	23385739	5
Deletion	Chr5	24877049	24877060	11
Deletion	Chr6	25665440	25665441	1
Deletion	Chr3	26922309	26922315	6
Deletion	Chr8	27625588	27625590	2
Deletion	Chr11	28275745	28275815	70
Deletion	Chr2	29976073	29976085	12
Deletion	Chr1	31332014	31332021	7
Deletion	Chr3	32117499	32117501	2
Deletion	Chr1	38052249	38052250	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	23843011	23843012	2
Insertion	Chr3	28982499	28982500	2
Insertion	Chr12	2611697	2611700	4
Insertion	Chr1	40468997	40468999	3
Insertion	Chr11	22614828	22614829	2
Insertion	Chr12	8086645	8086645	1
Insertion	Chr4	35341328	35341328	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14319396	14513118	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2659188	Chr3	26696315	LOC_Os08g05140
Translocation	Chr9	4333507	Chr2	35454779
Translocation	Chr7	10053962	Chr1	43145378	LOC_Os01g74500
Translocation	Chr7	10054612	Chr1	43145371	LOC_Os01g74500

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